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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043801 ID=TCONS_00043801|Name=TCONS_00043801|organism=Clytia hemisphaerica|type=transcript|length=894bp
TTGGTTGACAGAAATGGAGATTGTGGGCCATCCCAAATTTTTTGAGGCCT
GCACTTTGGCAATTCTGACAGATTATACCCCAATCTTACCAAATCAGAAG
AACTTTTGGttgtgtaatttttttaattagagATTCAGCTGCTCAAAGTC
AAGTGATTGGACTATCTTAATGTGACTTTACGCAGGGTTTACGATTTCTC
TTCTTTGGTTTCAAATCAACTGCCTTTGCTAAAGGATTCACTCTGGCATA
GTGCTCTCTCCCAGTAATGATTCCAACTGAGCATTTTTATCAGGCATTGA
GATGAACAAGTCCAGCATATCATTAATCGTGGAATATGCAATGCCTCCAT
TCCTTGCTCACCATAGAGGCCGAAACCAATGGACCATCGTCGTAAAAATG
GAACGACATGATCCTCTAGAAGGTGTAACTTTGGTGTGATGCTTTGATCT
GGAAACGTTTCACGAAAGAATGATAGTTAGATCTACTCAAAGATATTTGA
AGTTTCAAGAATAAGCTAACCTTGAGCATTCTGTCAACATGGTTGCCAAC
AAATGATTTACCATGGATCTTTGGCAATGTTTTGAGCAATGGCATCATGA
ACCAAATTGATGGTGCGATCAAGATCCCGAATCTGTTGCCGTAAAAGAGT
GATTTCCTGCCACGTTTCACCAAGTTTGTCAATTTTGGACCGTTCTAATC
CATCTGCTTGACTTGTCGAACCTGCGATCATNTGAATCTGTTGCCGTAAA
AGAGTAattgtaagtaagtaagtaagtaagtaatttaTTTGTCCTAAAAA
GCGAgacgagcgaccacactcatagacataaagctaaactaaggaggtgg
ccgcacgATATAATTACAAGAAAAGCTAAGAAAAATAAAGTTGC Run BLAST on NCBI transcript from alignment at sc0004598:1408..3662+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043801 ID=TCONS_00043801|Name=TCONS_00043801|organism=Clytia hemisphaerica|type=transcript|length=2255bp|location=Sequence derived from alignment at sc0004598:1408..3662+ (Clytia hemisphaerica)
TTGGTTGACAGAAATGGAGATTGTGGGCCATCCCAAATTTTTTGAGGCCT
GCACTTTGGCAATTCTGACAGATTATACCCCAATCTTACCAAATCAGAAG
AACTTTTGGttgtgtaatttttttaattagagATTCAGCTGCTCAAAGTC
AAGTGATTGGACTATCTTAATGTGACTTTACGCAGGGTTTACGGTTAGTA
TTTACTCAACATCTTCTTTATTTATTGAAGTAAAATCAACTAAATACATT
CAAATCCTCTCACAAACCATCTGAGGAACTTTAAAACAGCATAAAATTAG
TTATATATTACAAAATACTTTGATACGTTCAGTGGAAAAATTACAGTCAA
TAAAGAATGTCTCCAAGCACCTGATAGGCTCGCTTTTTCTGGCTAACCTC
CAATATCATAAGGGTGTTTTCTTTTTAAGGCAGTCCTAATTTGTTACATT
TAAGCTATCCCATCCCATAgctatggaaaaataaaaaatatctaaGGAAC
AGTCTTATTAAAATATAAAACTATATGAAAACTATAAATAAAATGGAACA
ATCATTATTCTCTacttcaaattaaaatttttattcctCTCTCTTCCTTT
TCAGATTTCTCTTCTTTGGTTTCAAATCAACTGCCTTTGCTAAAGGATTC
ACTCTGGCATAGTGCTCTCTCCCAGTAATGATTCCAACTGAGCATTTTTA
TCAGGCATTGAGATGAACAAGTCCAGCATATCATTAATCGTGGAATATGC
AATGCCTCCATTCCTTGCTCACCATAGAGGCCGAAACCAATGGACCATCG
TCGTAAAAATGGAACGACATGATCCTCTAGAAGGTGTAACTTTGGTGTGA
TGCTTTGATCTGGAAACGTTTCACGAAAGAATGATAGTAAGTCATCAATT
GCTGTCTCTATAAAAAGgaacaaattttgataaatcttaAGAAGTTTAAT
TCTAAAAATCCTACAGTCCTATGGGACTGGCATACAAAAATTTGGACGTA
TCGTCTTAGTGGTAATGCCAaacttttcaatgattttctttatataattt
tgtgtgattgaaatgaataaaaaataaaaacaaatatatacCTAGTTGAT
CAATGTCTGAAGTTGAAAAAGTTTTGCTTGAATTGATCATCTTATGGCAA
ATTGCATATTTTTTGAACAGATCTTTGAAGTTCGAACACAAAATATCACC
CCAATTTGTAATGTTTGTGTCATTCAATTCAAACTCAGCAATTTTCTCTG
GAATTGAGTCACACAAGAGCTCTAGGTTCTTTGTCTgaaaggaaaaaatc
ttttattgGATTGGGCGATACTACTGGAAGATATAAGTTTTTCCACTATT
TTTGCAACaacaaaatatgttttttgTAATAAATTACTAAGAGACACTAA
TTTTAAGACGCGTGTTTGCAGGTTGTAACCTCtgttcaaaatttcctttc
aGGTTAGATCTACTCAAAGATATTTGAAGTTTCAAGAATAAGCTAACCTT
GAGCATTCTGTCAACATGGTTGCCAACAAATGATTTACCATGGTAAGCTT
GCCTATGCACATGACACTTTTTAAGAACATCATCCAAACCTCTAACACAA
GGGCCACCACCTTTTAGTTCTTTGAAGGGATTATCCTTGAACAGTATATC
AACTTTTTTCTCCTGAAAGTAGAGAATGAATTCATATGTCCATTTGAGGT
TCCCATGTCAACTATAAAGTAGGATCTGACAATAACTAAGGCTAATATAA
ATGGCTCAAAGACTTAGGATACATGACAACTTATTGTATTATTAAGTTTA
TCATGTTGCATAATCTCAAAAGCACTAAAATATGTATAACAAATGTGCTT
ACTTTCTTATCAACCAAGTCAGACAAGTGTAACAGACGGGGTTCATAAAC
AGCTCTTATTTCTTTCTCGTGTGCAGGATCTTTGGCAATGTTTTGAGCAA
TGGCATCATGAACCAAATTGATGGTGCGATCAAGATCCCGAATCTGTTGC
CGTAAAAGAGTGATTTCCTGCCACGTTTCACCAAGTTTGTCAATTTTGGA
CCGTTCTAATCCATCTGCTTGACTTGTCGAACCTGCGATCATNTGAATCT
GTTGCCGTAAAAGAGTAattgtaagtaagtaagtaagtaagtaatttaTT
TGTCCTAAAAAGCGAgacgagcgaccacactcatagacataaagctaaac
taaggaggtggccgcacgATATAATTACAAGAAAAGCTAAGAAAAATAAA
GTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043801-exon-sc0004598-1491911889:1408..1600 | TCONS_00043801-exon-sc0004598-1491911889:1408..1600 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1510915933:1408..1600 | TCONS_00043801-exon-sc0004598-1510915933:1408..1600 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1575043694:1408..1600 | TCONS_00043801-exon-sc0004598-1575043694:1408..1600 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1491911889:2012..2293 | TCONS_00043801-exon-sc0004598-1491911889:2012..2293 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1510915933:2012..2293 | TCONS_00043801-exon-sc0004598-1510915933:2012..2293 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1575043694:2012..2293 | TCONS_00043801-exon-sc0004598-1575043694:2012..2293 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1491911889:2860..2949 | TCONS_00043801-exon-sc0004598-1491911889:2860..2949 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1510915933:2860..2949 | TCONS_00043801-exon-sc0004598-1510915933:2860..2949 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1575043694:2860..2949 | TCONS_00043801-exon-sc0004598-1575043694:2860..2949 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1491911889:3334..3662 | TCONS_00043801-exon-sc0004598-1491911889:3334..3662 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1510915933:3334..3662 | TCONS_00043801-exon-sc0004598-1510915933:3334..3662 | Clytia hemisphaerica | exon |
| TCONS_00043801-exon-sc0004598-1575043694:3334..3662 | TCONS_00043801-exon-sc0004598-1575043694:3334..3662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004598 | supercontig | sc0004598:1408..3662 + |
Blast
The following BLAST results are available for this feature:
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