TCONS_00043810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043810
Unique NameTCONS_00043810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043810 ID=TCONS_00043810|Name=TCONS_00043810|organism=Clytia hemisphaerica|type=transcript|length=545bp
GTACAACTTTCATGATTTCAAGCTATTTTACAATTTGCTGGAGAGATTCC
GCAAATAATATTCAGTATTTATGTTCACGCACCTTAATCAAATTCGGCTG
TGCATTTCAGTTTCTGCTTGTTTTCCTAAaaggttgaaaaaattttttta
ttattttatttattatttacacCTTTAGTCACCGAGAGTCAAGAACGTTT
ACCTGCTGCCGAATTGCTCTATCCGAATTATGCGACCAAGACTTTCGGAC
GGTCGTTAAAATCTTCATTCAAAAGAAGAAGTTAACTGTTAAAGATATGT
CTTACAGCTTGAACATTCCACTCGATCCGCGGCTGTCACAAAAAGAGCAT
GCAATTCATTTGGGGAAAGAGCTGTTCAAATTAGGCTACGTGAAAGTAAA
CGATAGACCTGTTATTGATAAAGACCACGTATTGGTTCTTAGGAATTGGC
AGACAAAGATTTAGTCATGAGAGACGAatttttggcgaattttgtatTAA
CTCCCCGATTTGCATAAATTAGTTCTCGTCAAAGTAAGTTCCCTT
Run BLAST on NCBI

transcript from alignment at sc0004609:4315..5151+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043810 ID=TCONS_00043810|Name=TCONS_00043810|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at sc0004609:4315..5151+ (Clytia hemisphaerica)
GTACAACTTTCATGATTTCAAGCTATTTTACAATTTGCTGGAGAGATTCC
GCAAATAATATTCAGTATTTATGTTCACGCACCTTAATCAAATTCGGCTG
TGCATTTCAGTTTCTGCTTGTTTTCCTAAaaggttgaaaaaattttttta
ttattttatttattatttacacCTTTAGTCACCGAGAGTCAAGAACGTTT
ACCTGCTGCCGAATTGCTCTATCCGGTAAGAAACAATGTTTTTTTCGTGA
CATATATAGTGAATCTTGACAAGTTAAACTCTGTGGGTTGAtataattaa
attttaaaaacaaatgggattttttgaaaatattgtttcaaCTTTTGATA
TTAAGGAAGATAAGTAACATTTCTGTTATATAAGGGATTTTTTTCTTNTT
TGATATTAAGGAAGATAAGTAACATTTCTGTTATATAagggatttttttc
tttttcttgacttATTATGTAGAGTTTCATCGAAATAGTTATGATTTATC
TTCATTCATGGTCTTAGAATTATGCGACCAAGACTTTCGGACGGTCGTTA
AAATCTTCATTCAAAAGAAGAAGTTAACTGTTAAAGATATGTCTTACAGC
TTGAACATTCCACTCGATCCGCGGCTGTCACAAAAAGAGCATGCAATTCA
TTTGGGGAAAGAGCTGTTCAAATTAGGCTACGTGAAAGTAAACGATAGAC
CTGTTATTGATAAAGACCACGTATTGGTTCTTAGGAATTGGCAGACAAAG
ATTTAGTCATGAGAGACGAatttttggcgaattttgtatTAACTCCCCGA
TTTGCATAAATTAGTTCTCGTCAAAGTAAGTTCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027484XLOC_027484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043810-exon-sc0004609-1491911889:4315..4539TCONS_00043810-exon-sc0004609-1491911889:4315..4539Clytia hemisphaericaexon
TCONS_00043810-exon-sc0004609-1510915933:4315..4539TCONS_00043810-exon-sc0004609-1510915933:4315..4539Clytia hemisphaericaexon
TCONS_00043810-exon-sc0004609-1575043694:4315..4539TCONS_00043810-exon-sc0004609-1575043694:4315..4539Clytia hemisphaericaexon
TCONS_00043810-exon-sc0004609-1491911889:4832..5151TCONS_00043810-exon-sc0004609-1491911889:4832..5151Clytia hemisphaericaexon
TCONS_00043810-exon-sc0004609-1510915933:4832..5151TCONS_00043810-exon-sc0004609-1510915933:4832..5151Clytia hemisphaericaexon
TCONS_00043810-exon-sc0004609-1575043694:4832..5151TCONS_00043810-exon-sc0004609-1575043694:4832..5151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004609supercontigsc0004609:4315..5151 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.233927	0.284784	0.22504	0.271501	0.254176	0.533864	0.440852	0	0.281285	0.280894	1.16685	1.31905	1.60857	2.69501	2.19359	3.03056	2.70145	1.12298	1.64325	0.242131	0.550332	0.113366	0	1.59261	0	1.05476	0.597016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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