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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043814 ID=TCONS_00043814|Name=TCONS_00043814|organism=Clytia hemisphaerica|type=transcript|length=601bp
CTAGAATggaaaaacaagaaatttttattCCAGCTTCACCACTTCTCTGC
ACATCACCTGTTGGAAAAACCTTGGAAGTTTTGAAAGAAAGGCTGTGTAA
TGCAGAAGAAGAGACTTTAAAACTATCAAAGCAGCTCTCCCAGTATGGAT
TTCAGAGgcttcaagcAGAAAAACCTGATGATGAACAGTCAAGAATTCAA
AATCAAGATATTACAGATTTTTCTGCAATTATAAGCAGACTATGTCAAAC
AGAAAGTACCATTCAATCATTAAAAGCAGGTATAACAAGTATCAAATCTG
AAGATTCAACCACCAAAGCCCAACTCATGCATGAAAACCAACAGTTACAA
GAATCTTATCAACAAAAGATCAAAGATTTGAAATGTGATGTTAAGAATTA
CAAACAACAGATTTTACTTCATGTTGTGTTGATGCAAAGAAAGCACtgga
aaatcaaatcaataagttgaaaaaggaaataaacaaaaagattgaCACTC
AAAGACAGCTTTCTGAAAAACTCAAAGCACAAGATGTTGAGCTTGGGAAA
TACCATGAAAAGCTATTCCaggttactttaatgggataaactttagcggg
g Run BLAST on NCBI protein sequence of TCONS_00043814-protein >TCONS_00043814-protein ID=TCONS_00043814-protein|Name=TCONS_00043814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
RMEKQEIFIPASPLLCTSPVGKTLEVLKERLCNAEEETLKLSKQLSQYGF
QRLQAEKPDDEQSRIQNQDITDFSAIISRLCQTESTIQSLKAGITSIKSE
DSTTKAQLMHENQQLQESYQQKIKDLKCDVKNYKQQILLHVVLMQRKHWK
IKSIS Run BLAST on NCBI transcript from alignment at sc0004613:3330..4787+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043814 ID=TCONS_00043814|Name=TCONS_00043814|organism=Clytia hemisphaerica|type=transcript|length=1458bp|location=Sequence derived from alignment at sc0004613:3330..4787+ (Clytia hemisphaerica)
CTAGAATggaaaaacaagaaatttttattCCAGCTTCACCACTTCTCTGC
ACATCACCTGTTGGAAAAACCTTGGAAGTTTTGAAAGAAAGGCTGTGTAA
TGCAGAAGAAGAGACTTTAAAACTATCAAAGCAGCTCTCCCAGTATGGAT
TTCAGAGGTATAATTTTGTATTTGCTTTGGTAATACCTGTTGAAAGAAAG
TCAGTCAATAATATGAATGCTACTGAGACAGATAGTATAATGTCTAATGT
GTGAAAAGAAAAGTTAAGTCAAAATTATTGTCTTGTCAAACAACCATTAT
GCATTAAAATGGAGGCAATCAAAGAAGATCAAGTAGGTATCttttaaaca
caaaattttattatatttttacttttttttaaggcttcaagcAGAAAAAC
CTGATGATGAACAGTCAAGAATTCAAAATCAAGATATTACAGATTTTTCT
GCAATTATAAGCAGACTATGTCAAACAGAAAGTACCATTCAATCATTAAA
AGCAGGTtggaaatttaagaaatttcctctaattgaaaaaataatttatc
aaaCCTAATTACATAGTTCAGTGTAGCTCTTAACTTCAGTTGAACTAGAA
TCTGATAATGTCTGTCTGTCAGTCATTAAACTTTGGGCCAGGctagagac
ttcaaaaatggtcagatttggctgaaatttggcacacttgtgcCTTCAGT
GAATATCTGGtggtctttttcatttttaagctCCAAATTTGgctcacttg
ttccttgggttaatatggtgtttttttattttttgaaagttttgattttt
gggtcaaaaattgtcggatttggTTAAAATTTGGCACAATTTCTTTTGGG
TGAATTCTAGTTTTTCAATTTACaataataatttgaaatttcctgataaC
TATAAAAATGGCTCAATTTTTGCACTTGAAATGAAGTTGAAATATTTCAG
TTGACTGGAATGCTCTGATTTTTTTATTGGTCTAGCctatcaattttaca
atttggcctacgaatgattgaaaaatactgaagttgagcccagtgtgGTT
AGCACGTTCAATATGAAAAAAGAGTTTGTTTTCAACCCGTCTTGGTGAAT
AACTTTGAATCTATCACATATTTTTTAAACTGATAGGTATAACAAGTATC
AAATCTGAAGATTCAACCACCAAAGCCCAACTCATGCATGAAAACCAACA
GTTACAAGAATCTTATCAACAAAAGATCAAAGATTTGAAATGTGATGTTA
AGAATTACAAACAACAGATTTTACTTCATGTTGTGTTGATGCAAAGAAAG
CACtggaaaatcaaatcaataagttgaaaaaggaaataaacaaaaagatt
gaCACTCAAAGACAGCTTTCTGAAAAACTCAAAGCACAAGATGTTGAGCT
TGGGAAATACCATGAAAAGCTATTCCaggttactttaatgggataaactt
tagcgggg Coding sequence (CDS) from alignment at sc0004613:3330..4787+ >TCONS_00043814 ID=TCONS_00043814|Name=TCONS_00043814|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0004613:3330..4787+ (Clytia hemisphaerica)
AGAATggaaaaacaagaaatttttattCCAGCTTCACCACTTCTCTGCAC
ATCACCTGTTGGAAAAACCTTGGAAGTTTTGAAAGAAAGGCTGTGTAATG
CAGAAGAAGAGACTTTAAAACTATCAAAGCAGCTCTCCCAGTATGGATTT
CAGAGgcttcaagcAGAAAAACCTGATGATGAACAGTCAAGAATTCAAAA
TCAAGATATTACAGATTTTTCTGCAATTATAAGCAGACTATGTCAAACAG
AAAGTACCATTCAATCATTAAAAGCAGGTATAACAAGTATCAAATCTGAA
GATTCAACCACCAAAGCCCAACTCATGCATGAAAACCAACAGTTACAAGA
ATCTTATCAACAAAAGATCAAAGATTTGAAATGTGATGTTAAGAATTACA
AACAACAGATTTTACTTCATGTTGTGTTGATGCAAAGAAAGCACtggaaa
atcaaatcaataagttgaAGAATggaaaaacaagaaatttttattCCAGC
TTCACCACTTCTCTGCACATCACCTGTTGGAAAAACCTTGGAAGTTTTGA
AAGAAAGGCTGTGTAATGCAGAAGAAGAGACTTTAAAACTATCAAAGCAG
CTCTCCCAGTATGGATTTCAGAGgcttcaagcAGAAAAACCTGATGATGA
ACAGTCAAGAATTCAAAATCAAGATATTACAGATTTTTCTGCAATTATAA
GCAGACTATGTCAAACAGAAAGTACCATTCAATCATTAAAAGCAGGTATA
ACAAGTATCAAATCTGAAGATTCAACCACCAAAGCCCAACTCATGCATGA
AAACCAACAGTTACAAGAATCTTATCAACAAAAGATCAAAGATTTGAAAT
GTGATGTTAAGAATTACAAACAACAGATTTTACTTCATGTTGTGTTGATG
CAAAGAAAGCACtggaaaatcaaatcaataagttgaAGAATggaaaaaca
agaaatttttattCCAGCTTCACCACTTCTCTGCACATCACCTGTTGGAA
AAACCTTGGAAGTTTTGAAAGAAAGGCTGTGTAATGCAGAAGAAGAGACT
TTAAAACTATCAAAGCAGCTCTCCCAGTATGGATTTCAGAGgcttcaagc
AGAAAAACCTGATGATGAACAGTCAAGAATTCAAAATCAAGATATTACAG
ATTTTTCTGCAATTATAAGCAGACTATGTCAAACAGAAAGTACCATTCAA
TCATTAAAAGCAGGTATAACAAGTATCAAATCTGAAGATTCAACCACCAA
AGCCCAACTCATGCATGAAAACCAACAGTTACAAGAATCTTATCAACAAA
AGATCAAAGATTTGAAATGTGATGTTAAGAATTACAAACAACAGATTTTA
CTTCATGTTGTGTTGATGCAAAGAAAGCACtggaaaatcaaatcaataag
ttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043814-exon-sc0004613-1491911889:3330..3486 | TCONS_00043814-exon-sc0004613-1491911889:3330..3486 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1510915933:3330..3486 | TCONS_00043814-exon-sc0004613-1510915933:3330..3486 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1575043694:3330..3486 | TCONS_00043814-exon-sc0004613-1575043694:3330..3486 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1491911889:3713..3834 | TCONS_00043814-exon-sc0004613-1491911889:3713..3834 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1510915933:3713..3834 | TCONS_00043814-exon-sc0004613-1510915933:3713..3834 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1575043694:3713..3834 | TCONS_00043814-exon-sc0004613-1575043694:3713..3834 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1491911889:4466..4787 | TCONS_00043814-exon-sc0004613-1491911889:4466..4787 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1510915933:4466..4787 | TCONS_00043814-exon-sc0004613-1510915933:4466..4787 | Clytia hemisphaerica | exon |
| TCONS_00043814-exon-sc0004613-1575043694:4466..4787 | TCONS_00043814-exon-sc0004613-1575043694:4466..4787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004613 | supercontig | sc0004613:3330..4787 + |
Blast
The following BLAST results are available for this feature:
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