TCONS_00043815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043815
Unique NameTCONS_00043815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043815 ID=TCONS_00043815|Name=TCONS_00043815|organism=Clytia hemisphaerica|type=transcript|length=428bp
CGTTCATCTGTGGTGTTTTTAGACGTTTGAATTGGTTGTAGCCTTTATCT
TCAACGATTCGGCGTACAGAGGAATGAGAGATTTCAAGCTCTCTAGCGAG
TTCTCTTGGTGAAGCGTGTGTCCCAGGTTCTTCTTCCTGCGAGCAGATCA
TTTCTTCAACAAAAGCTTCATTTTCAGCAGTTCTGGCACTTCTTGGTCTT
CCAGACCCTTTCTTTCGCTCCATAGTACCATACTCTTTAAATTTCTTGAC
GGCACGTTTAACTTTTGAATAATGCCAGTTCATTTCTGGGTTCTGTTTCC
ATATCTCATAAGCTGTATACTCTTTCTCGATATAATGTCTGATAATCACC
TTGTCTTCGTCAGAAAGAGGTGCCATTCTTCAATCTGTCTTGTGGCGATT
TTTCTTCAGTAATGGTTAGAAATGCCTG
Run BLAST on NCBI

protein sequence of TCONS_00043815-protein

>TCONS_00043815-protein ID=TCONS_00043815-protein|Name=TCONS_00043815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MAPLSDEDKVIIRHYIEKEYTAYEIWKQNPEMNWHYSKVKRAVKKFKEYG
TMERKKGSGRPRSARTAENEAFVEEMICSQEEEPGTHASPRELARELEIS
HSSVRRIVEDKGYNQFKRLKTPQMN
Run BLAST on NCBI

transcript from alignment at sc0004613:620..1047

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043815 ID=TCONS_00043815|Name=TCONS_00043815|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0004613:620..1047 (Clytia hemisphaerica)
CAGGCATTTCTAACCATTACTGAAGAAAAATCGCCACAAGACAGATTGAA
GAATGGCACCTCTTTCTGACGAAGACAAGGTGATTATCAGACATTATATC
GAGAAAGAGTATACAGCTTATGAGATATGGAAACAGAACCCAGAAATGAA
CTGGCATTATTCAAAAGTTAAACGTGCCGTCAAGAAATTTAAAGAGTATG
GTACTATGGAGCGAAAGAAAGGGTCTGGAAGACCAAGAAGTGCCAGAACT
GCTGAAAATGAAGCTTTTGTTGAAGAAATGATCTGCTCGCAGGAAGAAGA
ACCTGGGACACACGCTTCACCAAGAGAACTCGCTAGAGAGCTTGAAATCT
CTCATTCCTCTGTACGCCGAATCGTTGAAGATAAAGGCTACAACCAATTC
AAACGTCTAAAAACACCACAGATGAACG

Coding sequence (CDS) from alignment at sc0004613:620..1047

>TCONS_00043815 ID=TCONS_00043815|Name=TCONS_00043815|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0004613:620..1047 (Clytia hemisphaerica)
ATGGCACCTCTTTCTGACGAAGACAAGGTGATTATCAGACATTATATCGA
GAAAGAGTATACAGCTTATGAGATATGGAAACAGAACCCAGAAATGAACT
GGCATTATTCAAAAGTTAAACGTGCCGTCAAGAAATTTAAAGAGTATGGT
ACTATGGAGCGAAAGAAAGGGTCTGGAAGACCAAGAAGTGCCAGAACTGC
TGAAAATGAAGCTTTTGTTGAAGAAATGATCTGCTCGCAGGAAGAAGAAC
CTGGGACACACGCTTCACCAAGAGAACTCGCTAGAGAGCTTGAAATCTCT
CATTCCTCTGTACGCCGAATCGTTGAAGATAAAGGCTACAACCAATTCAA
ACGTCTAAAAACACCACAGATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027489XLOC_027489Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043815-proteinTCONS_00043815-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043815-exon-sc0004613-1491911889:620..1047TCONS_00043815-exon-sc0004613-1491911889:620..1047Clytia hemisphaericaexon
TCONS_00043815-exon-sc0004613-1510915933:620..1047TCONS_00043815-exon-sc0004613-1510915933:620..1047Clytia hemisphaericaexon
TCONS_00043815-exon-sc0004613-1575043694:620..1047TCONS_00043815-exon-sc0004613-1575043694:620..1047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004613supercontigsc0004613:620..1047 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.485996	1.57974	1.10054	0.179451	0.26145	0.21201	0.208275	0	0.308606	0.173066	0.618081	0.127152	0	0.223779	0.541538	0.449919	0.167492	0	0	0.180204	0.0214719	0.458391	0.371489	0.168869	1.06958	2.63093	0.514629	0.24676	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top