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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043818 ID=TCONS_00043818|Name=TCONS_00043818|organism=Clytia hemisphaerica|type=transcript|length=930bp
ATGATATCAGGCGGAGACAAAACGCCCTCATCGTAAGATTCTCGGGTCGT
CTTATTGTTTGCTCCTTTTGTCAAGTCTGTCGGTCCTATTGTTCATGCTA
AATCCATACACGATGGCGTCAATGTTTGGcggcatacctgaaaataaaaa
caaaaagattattattatttttgcatgaattacgctaccttatacgtcat
tataaaattatacaaaacgaaaGTGAGTCTAGGCCACCCGCCTAGAGAGC
AAGGGCCCTAATATTttcaggggaaaacgaaagtgatcgatattcttcga
aggaagaacttgccaaaaaaaaccctagccctagacaaaaagatgtattt
taaGGTTGGGAATGGAGCTCTACAAGAATGGGAAACACTCTGGGACATGG
TATTCCACCCACAAAAATGCAAGCATCTCACCATCACGAACAAAACCAAA
CCCATAGAATCTGTTTATTCAATCCATAATGAGAACCTCGAGAAAGTATC
AAATGCCAAATATCTCGGGGTGACTTTAAACAAGAAGCTTAAGTGGAATA
CACACATCGATGCTATTTGTAAGAAAGCCAACCAAAAACGATTGTTCTTA
CAAAGAAATTTGCGAGGATGTTCTCCTAAAATAAAGGAGAAAGCGTTCAA
CATTTATGTCCGACCAATCGTATCGTATGCTTCACCAGTTTGGAATCCTA
TATCAAATCAATCACTTTGCGATCAACTTGAAATGGTCCAACGAAAAGGG
GCCCGGTTTGTTTATTCTGATTGGAGGTGGGAGGCTAGTCCCACTAGAAT
GATGAAGGACTTGAGCTGGAAACCTCTAGAACATCATCGAAAAGTCGATT
CAGTCGTTCTTTTACATGATATAAGAGGAGGGAAACTTGTTATGCCTGGT
ATTTTACCCAAACCAGTTCGGGATAGTAAN Run BLAST on NCBI protein sequence of TCONS_00043818-protein >TCONS_00043818-protein ID=TCONS_00043818-protein|Name=TCONS_00043818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MYFKVGNGALQEWETLWDMVFHPQKCKHLTITNKTKPIESVYSIHNENLE
KVSNAKYLGVTLNKKLKWNTHIDAICKKANQKRLFLQRNLRGCSPKIKEK
AFNIYVRPIVSYASPVWNPISNQSLCDQLEMVQRKGARFVYSDWRWEASP
TRMMKDLSWKPLEHHRKVDSVVLLHDIRGGKLVMPGILPKPVRDSX Run BLAST on NCBI transcript from alignment at sc0004619:4091..5020 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043818 ID=TCONS_00043818|Name=TCONS_00043818|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at sc0004619:4091..5020 (Clytia hemisphaerica)
NTTACTATCCCGAACTGGTTTGGGTAAAATACCAGGCATAACAAGTTTCC
CTCCTCTTATATCATGTAAAAGAACGACTGAATCGACTTTTCGATGATGT
TCTAGAGGTTTCCAGCTCAAGTCCTTCATCATTCTAGTGGGACTAGCCTC
CCACCTCCAATCAGAATAAACAAACCGGGCCCCTTTTCGTTGGACCATTT
CAAGTTGATCGCAAAGTGATTGATTTGATATAGGATTCCAAACTGGTGAA
GCATACGATACGATTGGTCGGACATAAATGTTGAACGCTTTCTCCTTTAT
TTTAGGAGAACATCCTCGCAAATTTCTTTGTAAGAACAATCGTTTTTGGT
TGGCTTTCTTACAAATAGCATCGATGTGTGTATTCCACTTAAGCTTCTTG
TTTAAAGTCACCCCGAGATATTTGGCATTTGATACTTTCTCGAGGTTCTC
ATTATGGATTGAATAAACAGATTCTATGGGTTTGGTTTTGTTCGTGATGG
TGAGATGCTTGCATTTTTGTGGGTGGAATACCATGTCCCAGAGTGTTTCC
CATTCTTGTAGAGCTCCATTCCCAACCttaaaatacatctttttgtctag
ggctagggttttttttggcaagttcttccttcgaagaatatcgatcactt
tcgttttcccctgaaAATATTAGGGCCCTTGCTCTCTAGGCGGGTGGCCT
AGACTCACtttcgttttgtataattttataatgacgtataaggtagcgta
attcatgcaaaaataataataatctttttgtttttattttcaggtatgcc
gCCAAACATTGACGCCATCGTGTATGGATTTAGCATGAACAATAGGACCG
ACAGACTTGACAAAAGGAGCAAACAATAAGACGACCCGAGAATCTTACGA
TGAGGGCGTTTTGTCTCCGCCTGATATCAT Coding sequence (CDS) from alignment at sc0004619:4091..5020 >TCONS_00043818 ID=TCONS_00043818|Name=TCONS_00043818|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0004619:4091..5020 (Clytia hemisphaerica)
NTTACTATCCCGAACTGGTTTGGGTAAAATACCAGGCATAACAAGTTTCC
CTCCTCTTATATCATGTAAAAGAACGACTGAATCGACTTTTCGATGATGT
TCTAGAGGTTTCCAGCTCAAGTCCTTCATCATTCTAGTGGGACTAGCCTC
CCACCTCCAATCAGAATAAACAAACCGGGCCCCTTTTCGTTGGACCATTT
CAAGTTGATCGCAAAGTGATTGATTTGATATAGGATTCCAAACTGGTGAA
GCATACGATACGATTGGTCGGACATAAATGTTGAACGCTTTCTCCTTTAT
TTTAGGAGAACATCCTCGCAAATTTCTTTGTAAGAACAATCGTTTTTGGT
TGGCTTTCTTACAAATAGCATCGATGTGTGTATTCCACTTAAGCTTCTTG
TTTAAAGTCACCCCGAGATATTTGGCATTTGATACTTTCTCGAGGTTCTC
ATTATGGATTGAATAAACAGATTCTATGGGTTTGGTTTTGTTCGTGATGG
TGAGATGCTTGCATTTTTGTGGGTGGAATACCATGTCCCAGAGTGTTTCC
CATTCTTGTAGAGCTCCATTCCCAACCttaaaatacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043818-exon-sc0004619-1491911889:4091..5020 | TCONS_00043818-exon-sc0004619-1491911889:4091..5020 | Clytia hemisphaerica | exon |
| TCONS_00043818-exon-sc0004619-1510915933:4091..5020 | TCONS_00043818-exon-sc0004619-1510915933:4091..5020 | Clytia hemisphaerica | exon |
| TCONS_00043818-exon-sc0004619-1575043694:4091..5020 | TCONS_00043818-exon-sc0004619-1575043694:4091..5020 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004619 | supercontig | sc0004619:4091..5020 . |
Blast
The following BLAST results are available for this feature:
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