TCONS_00043830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043830
Unique NameTCONS_00043830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043830 ID=TCONS_00043830|Name=TCONS_00043830|organism=Clytia hemisphaerica|type=transcript|length=254bp
NNcctacacaaattttgtgccCCTCCTGTCTGCGGTACTGCCCTCTAGAA
AATCTGGAAATAACCCAAAAACTTGAATGTGTTATTTTTGGAGAATAATT
ACTATACTTTTGGGCAAAAATaagtatttttaatattataatTGATGTAA
ATTAGCATGCAAGATCTGAAGATAAACTTACCGTCaatggctctaacttg
ggacagtctgataaaacatgggacagcaattcggccatcaTTTTACAGAA
CCTN
Run BLAST on NCBI

transcript from alignment at sc0004637:2492..2745

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043830 ID=TCONS_00043830|Name=TCONS_00043830|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0004637:2492..2745 (Clytia hemisphaerica)
NAGGTTCTGTAAAAtgatggccgaattgctgtcccatgttttatcagact
gtcccaagttagagccattGACGGTAAGTTTATCTTCAGATCTTGCATGC
TAATTTACATCAattataatattaaaaatacttATTTTTGCCCAAAAGTA
TAGTAATTATTCTCCAAAAATAACACATTCAAGTTTTTGGGTTATTTCCA
GATTTTCTAGAGGGCAGTACCGCAGACAGGAGGggcacaaaatttgtgta
ggNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027502XLOC_027502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043830-exon-sc0004637-1491911889:2492..2745TCONS_00043830-exon-sc0004637-1491911889:2492..2745Clytia hemisphaericaexon
TCONS_00043830-exon-sc0004637-1510915933:2492..2745TCONS_00043830-exon-sc0004637-1510915933:2492..2745Clytia hemisphaericaexon
TCONS_00043830-exon-sc0004637-1575043694:2492..2745TCONS_00043830-exon-sc0004637-1575043694:2492..2745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004637supercontigsc0004637:2492..2745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1706	16.8573	3.81924	2.358	64.4944	39.9784	62.4837	85.7827	62.8004	56.8351	41.2907	36.2792	41.1652	39.5194	17.4831	29.4347	42.2339	28.3314	33.8412	40.1522	97.0802	80.2897	54.7276	53.4936	20.187	20.2801	207.418	146.95	81.5308	88.2604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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