TCONS_00043843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043843
Unique NameTCONS_00043843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043843 ID=TCONS_00043843|Name=TCONS_00043843|organism=Clytia hemisphaerica|type=transcript|length=814bp
aaaaaagtttattgttATCATTGATAATAAGAGAAAGCTATTGTTTCttt
ttgaataagaaaaaaaagttgcCTTCATTATTTACTCGAGGTAAAGAGCA
CTTGATTGTTAATGTTGGTTGACATACAATAAAGCAAGAGGGGGGACATG
AGACTTTTTGATATATCTCGAAAATGAGATATTGTTAGTTTTCGAAATAA
TATTATTGACAATGTTGGTGATGATATTTAATGATGACTGTCAGGTCATG
ATACAAAGGATATATGTTTCAATTGGTCAAATGTAATTTAAGGTCCGGAA
AGATAGATGCAATATGGCTTATGTTGATTGTGGATTAACTTTTGAGGTAA
CCCTGGGCAGGAGAAAGAGAGACATACAGAACAACGGCTGTTTCTCCAAT
ATTTttgttacaaaaaaaaatcgTATATAAAACAATACATTGATTAAATT
AAAGTTAGTATTGCGGTTACCTCTTTCTATCAAGCATTGCCGTCGTGAGG
CTCACAAAATTTTACACACATAGAATACAGAGAAAAAACGGAcaagagaa
aagagaaagatGGATAGATATATAGAAAGATATCATTTTGGTTTTGATGG
ATTGGGCCCGAGTGTTGGAGTGAGATAAGTGCGAGGAGAGGAGAAGAAAG
AGAGAGATAAATGCGAAAGGGAAAATAAAGACGGGGATTTGTTTCACTTG
AAACCGGACGCAATGGTTTAAAGTTGCGGTATTTTGCAAAAAGAACGGCG
CGTGAAATTGTGTAAACGTTTTCATTGGTTAGCCTATCATTCTGAGGTGT
GATGCTTTATTGCT
Run BLAST on NCBI

transcript from alignment at sc0004651:1..814

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043843 ID=TCONS_00043843|Name=TCONS_00043843|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at sc0004651:1..814 (Clytia hemisphaerica)
AGCAATAAAGCATCACACCTCAGAATGATAGGCTAACCAATGAAAACGTT
TACACAATTTCACGCGCCGTTCTTTTTGCAAAATACCGCAACTTTAAACC
ATTGCGTCCGGTTTCAAGTGAAACAAATCCCCGTCTTTATTTTCCCTTTC
GCATTTATCTCTCTCTTTCTTCTCCTCTCCTCGCACTTATCTCACTCCAA
CACTCGGGCCCAATCCATCAAAACCAAAATGATATCTTTCTATATATCTA
TCCatctttctcttttctcttgTCCGTTTTTTCTCTGTATTCTATGTGTG
TAAAATTTTGTGAGCCTCACGACGGCAATGCTTGATAGAAAGAGGTAACC
GCAATACTAACTTTAATTTAATCAATGTATTGTTTTATATAcgatttttt
tttgtaacaaAAATATTGGAGAAACAGCCGTTGTTCTGTATGTCTCTCTT
TCTCCTGCCCAGGGTTACCTCAAAAGTTAATCCACAATCAACATAAGCCA
TATTGCATCTATCTTTCCGGACCTTAAATTACATTTGACCAATTGAAACA
TATATCCTTTGTATCATGACCTGACAGTCATCATTAAATATCATCACCAA
CATTGTCAATAATATTATTTCGAAAACTAACAATATCTCATTTTCGAGAT
ATATCAAAAAGTCTCATGTCCCCCCTCTTGCTTTATTGTATGTCAACCAA
CATTAACAATCAAGTGCTCTTTACCTCGAGTAAATAATGAAGgcaacttt
tttttcttattcaaaaaGAAACAATAGCTTTCTCTTATTATCAATGATaa
caataaactttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027513XLOC_027513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043843-exon-sc0004651-1491911889:1..814TCONS_00043843-exon-sc0004651-1491911889:1..814Clytia hemisphaericaexon
TCONS_00043843-exon-sc0004651-1510915933:1..814TCONS_00043843-exon-sc0004651-1510915933:1..814Clytia hemisphaericaexon
TCONS_00043843-exon-sc0004651-1575043694:1..814TCONS_00043843-exon-sc0004651-1575043694:1..814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004651supercontigsc0004651:1..814 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.368152	0.907271	0.0303316	0	0	0.123173	1.2196	2.06196	0.876395	3.58107	0.434375	0.959031	0.463512	0.0825018	0.992265	0.637494	0.259003	0	0.52972	0	0	0.123197	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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