TCONS_00043847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043847
Unique NameTCONS_00043847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1006

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043847 ID=TCONS_00043847|Name=TCONS_00043847|organism=Clytia hemisphaerica|type=transcript|length=1006bp
TAGAAATGAAAACTTGAATTGAGGCTCCACCGATGctcaaaaattttgtt
gttgaaaCCATGTGTCCGTGTTCATTACATTGCATTCTGGCACATCATAG
ATACCTTTGGAAGTTTATGTTTATGGTAATTAGCTACAGAGggcaagaga
aattgattcCTTTGGGGCTTAGGACAATTGGATGTGGCTATCTTGCATAT
CAATATGAATGCTATCTAAAAAGTAAAAACAAAGAATATGATGGGAGTAG
CACCTTAAAGATGATTGGCGGTGATTGCAAGATACTTGAGGACAACATCG
ATAagtttttggaaacttttatGACAAAAAACGAATCAAGACAAAGTAAA
AGCTTCGTAAAGATGAGACAAGTCAGCAGTTTATATCATCAATTCAAGGA
TTTAGCAGTGGATATGCGTTCAAAAACTGCCAACAAAATTCGAGCAGAAT
CATTTGCTAAGCGAGCTAAGGGATTCTTCGTTAAATTAAAGTCATGGGCT
GGTGGAGCATCAACATCTAAGTTACCCTATTTGCACATTATGATCGATCA
CATTGGACAAATTATGGAAGATTGGTGTGAAATATTGGACTGGGGTAATG
GCTATTTTTCATGTACCGCAGGTGAACATCtaaacaaaataattaaaacT
AAAGAGATACACGAAACCAATTTGAGTGAGAACAGATTCAAGGACATTAT
TCGTGATATGAgaataaaacaattttattatcCTATGTCTGTCTATAAAC
AGTTCAAGGAAATAACTTGTTCAAGGTGTCATGAAAAAGGACAcaacaag
aaaaacaaatcttgCAGACTACATCCCTCGCAACCAACAGAAACTTTCGA
ACTATCTGAtaatgaaaacaattaaaacaagcaacaaaagaacatgttaa
aaaaagaaatattaaaatatACTATCTTTTAACTTTAGCGAGTATTGAAC
CCAGTAAAACACTTGATGTACATTCTCGCTAAAGTTAAATTTGATCAGGA
ATTTGC
Run BLAST on NCBI

protein sequence of TCONS_00043847-protein

>TCONS_00043847-protein ID=TCONS_00043847-protein|Name=TCONS_00043847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MLKNFVVETMCPCSLHCILAHHRYLWKFMFMVISYRGQEKLIPLGLRTIG
CGYLAYQYECYLKSKNKEYDGSSTLKMIGGDCKILEDNIDKFLETFMTKN
ESRQSKSFVKMRQVSSLYHQFKDLAVDMRSKTANKIRAESFAKRAKGFFV
KLKSWAGGASTSKLPYLHIMIDHIGQIMEDWCEILDWGNGYFSCTAGEHL
NKIIKTKEIHETNLSENRFKDIIRDMRIKQFYYPMSVYKQFKEITCSRCH
EKGHNKKNKSCRLHPSQPTETFELSDNENN
Run BLAST on NCBI

transcript from alignment at sc0004662:29..2088-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043847 ID=TCONS_00043847|Name=TCONS_00043847|organism=Clytia hemisphaerica|type=transcript|length=2060bp|location=Sequence derived from alignment at sc0004662:29..2088- (Clytia hemisphaerica)
TAGAAATGAAAACTTGAATTGAGGTTATAAAAAACCCCCTTCTAACAGAC
CCGGTGGGATTTTTCCAAGCAGTGGGGATAAAAAGAAAAGACTGAAATTC
GATGGGGATGAGCTTTTCCAGATTTTTTTGTTTAAAACTCAATGGGGATG
GAGAAAATACATTGCTATTTGGCAGAGAGGATTTAAATGTTGTAAATTTT
TTTGATCTGTGGATCTGTGAGAAGGGGGTGTTAACAAATGTTGTATAGCA
ATCAATTACCTTGGCGAAAAAAAGGCTCATGCACCAATTTGGCACAATAA
ACTATGTAGGGTGTTTCCCACCAGTTCCTTGTTTACAACCCTGTCTCAGT
GACCTGATGAAGTTTTGCCACGGTGGTCTTTTTAGGCTATTTTTGTCCCA
CTTGCTTAGCAACGTGATTAAATTTCTTCCCTAAGGTAAACTAAATTTTG
TTATGACTTCCAAAGTTGTTTTCCAGAAAATATACCTTATTTTAAAAAGT
TTAAGCTAATAAAACCATTTTTTTGACATAATCCCCTGAAATTTTCTTTT
TAGTACCAATTTTTTCCTTAGGCTCCACCGATGCTCAAAAATTTTGTTGT
TGAAACCATGTGTCCGTGTTCATTACATTGCATTCTGGCACATCATAGAT
ACCTTTGGAAGTTTATGTTTATGGTAATTAGCTACAGAGGGCAAGAGAAA
TTGATTCCTTTGGGGCTTAGGACAATTGGATGTGGCTATCTTGCATATCA
ATATGAATGCTATCTAAAAAGGTACTTTTATTTTCTGTTAGAAATCGAAG
AAAGGCAAGATTCGACAAGTTTCTTTTGTATCTGAACAATGTGAATATCT
CTTCTATATAATATCAGAACTATGCTAAACGTAAATAAAGATATATACTA
TGACAAAATTAAAAATCGATAGAAAATATTTCCATCATGTAAATTTTAAC
AAATAGTCAAACGATAAAATAAACTTCTTGTATATAACTATAAACTAGAT
TATCAAATAAAGTAAATAAAGTGAAATATGAATGTACAAGTAAAAGTTAA
CCCCGTAAATCTAATGCGAATAATTTTTACTTCCATACCCTTTTTCAGTA
AAAACAAAGAATATGATGGGAGTAGCACCTTAAAGATGATTGGCGGTGAT
TGCAAGATACTTGAGGACAACATCGATAAGTTTTTGGAAACTTTTATGAC
AAAAAACGAATCAAGACAAAGTAAAAGCTTCGTAAAGATGAGACAAGTCA
GCAGTTTATATCATCAATTCAAGGATTTAGCAGTGTAAGTATTTTGTAAT
AAAAAAGGTTCATGCGTCATAATTTAAGTACTCAAAAATAATGGCCACTA
TTCCTGGAAAAACCTAAAAACTTTCTTTCGATAATAGATTGAACTTATGT
AAGATTTTCAAAATAAACATGAGCAATATATTGTATTTAAAATGTCTAAC
TATCAATTTTCAGGGATATGCGTTCAAAAACTGCCAACAAAATTCGAGCA
GAATCATTTGCTAAGCGAGCTAAGGGATTCTTCGTTAAATTAAAGTCATG
GGCTGGTGGAGCATCAACATCTAAGTTACCCTATTTGCACATTATGATCG
ATCACATTGGACAAATTATGGAAGATTGGTGTGAAATATTGGACTGGGGT
AATGGCTATTTTTCATGTACCGCAGGTGAACATCTAAACAAAATAATTAA
AACTAAAGAGATACACGAAACCAATTTGAGTGAGAACAGATTCAAGGACA
TTATTCGTGATATGAGAATAAAACAATTTTATTATCCTATGTCTGTCTAT
AAACAGTTCAAGGAAATAACTTGTTCAAGGTGTCATGAAAAAGGACACAA
CAAGAAAAACAAATCTTGCAGACTACATCCCTCGCAACCAACAGAAACTT
TCGAACTATCTGATAATGAAAACAATTAAAACAAGCAACAAAAGAACATG
TTAAAAAAAGAAATATTAAAATATACTATCTTTTAACTTTAGCGAGTATT
GAACCCAGTAAAACACTTGATGTACATTCTCGCTAAAGTTAAATTTGATC
AGGAATTTGC

Coding sequence (CDS) from alignment at sc0004662:29..2088-

>TCONS_00043847 ID=TCONS_00043847|Name=TCONS_00043847|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at sc0004662:29..2088- (Clytia hemisphaerica)
GGATATGCGTTCAAAAACTGCCAACAAAATTCGAGCAGAATCATTTGCTA
AGCGAGCTAAGGGATTCTTCGTTAAATTAAAGTCATGGGCTGGTGGAGCA
TCAACATCTAAGTTACCCTATTTGCACATTATGATCGATCACATTGGACA
AATTATGGAAGATTGGTGTGAAATATTGGACTGGGGTAATGGCTATTTTT
CATGTACCGCAGGTGAACATCTAAACAAAATAATTAAAACTAAAGAGATA
CACGAAACCAATTTGAGTGAGAACAGATTCAAGGACATTATTCGTGATAT
GAGAATAAAACAATTTTATTATCCTATGTCTGTCTATAAACAGTTCAAGG
AAATAACTTGTTCAAGGTGTCATGAAAAAGGACACAACAAGAAAAACAAA
TCTTGCAGACTACATCCCTCGCAACCAACAGAAACTTTCGAACTATCTGA
TAATGAAAACAATTAATAAAAACAAAGAATATGATGGGAGTAGCACCTTA
AAGATGATTGGCGGTGATTGCAAGATACTTGAGGACAACATCGATAAGTT
TTTGGAAACTTTTATGACAAAAAACGAATCAAGACAAAGTAAAAGCTTCG
TAAAGATGAGACAAGTCAGCAGTTTATATCATCAATTCAAGGATTTAGCA
GTATGCTCAAAAATTTTGTTGTTGAAACCATGTGTCCGTGTTCATTACAT
TGCATTCTGGCACATCATAGATACCTTTGGAAGTTTATGTTTATGGTAAT
TAGCTACAGAGGGCAAGAGAAATTGATTCCTTTGGGGCTTAGGACAATTG
GATGTGGCTATCTTGCATATCAATATGAATGCTATCTAAAAAGGGATATG
CGTTCAAAAACTGCCAACAAAATTCGAGCAGAATCATTTGCTAAGCGAGC
TAAGGGATTCTTCGTTAAATTAAAGTCATGGGCTGGTGGAGCATCAACAT
CTAAGTTACCCTATTTGCACATTATGATCGATCACATTGGACAAATTATG
GAAGATTGGTGTGAAATATTGGACTGGGGTAATGGCTATTTTTCATGTAC
CGCAGGTGAACATCTAAACAAAATAATTAAAACTAAAGAGATACACGAAA
CCAATTTGAGTGAGAACAGATTCAAGGACATTATTCGTGATATGAGAATA
AAACAATTTTATTATCCTATGTCTGTCTATAAACAGTTCAAGGAAATAAC
TTGTTCAAGGTGTCATGAAAAAGGACACAACAAGAAAAACAAATCTTGCA
GACTACATCCCTCGCAACCAACAGAAACTTTCGAACTATCTGATAATGAA
AACAATTAATAAAAACAAAGAATATGATGGGAGTAGCACCTTAAAGATGA
TTGGCGGTGATTGCAAGATACTTGAGGACAACATCGATAAGTTTTTGGAA
ACTTTTATGACAAAAAACGAATCAAGACAAAGTAAAAGCTTCGTAAAGAT
GAGACAAGTCAGCAGTTTATATCATCAATTCAAGGATTTAGCAGTATGCT
CAAAAATTTTGTTGTTGAAACCATGTGTCCGTGTTCATTACATTGCATTC
TGGCACATCATAGATACCTTTGGAAGTTTATGTTTATGGTAATTAGCTAC
AGAGGGCAAGAGAAATTGATTCCTTTGGGGCTTAGGACAATTGGATGTGG
CTATCTTGCATATCAATATGAATGCTATCTAAAAAGGGATATGCGTTCAA
AAACTGCCAACAAAATTCGAGCAGAATCATTTGCTAAGCGAGCTAAGGGA
TTCTTCGTTAAATTAAAGTCATGGGCTGGTGGAGCATCAACATCTAAGTT
ACCCTATTTGCACATTATGATCGATCACATTGGACAAATTATGGAAGATT
GGTGTGAAATATTGGACTGGGGTAATGGCTATTTTTCATGTACCGCAGGT
GAACATCTAAACAAAATAATTAAAACTAAAGAGATACACGAAACCAATTT
GAGTGAGAACAGATTCAAGGACATTATTCGTGATATGAGAATAAAACAAT
TTTATTATCCTATGTCTGTCTATAAACAGTTCAAGGAAATAACTTGTTCA
AGGTGTCATGAAAAAGGACACAACAAGAAAAACAAATCTTGCAGACTACA
TCCCTCGCAACCAACAGAAACTTTCGAACTATCTGATAATGAAAACAATT
AATAAAAACAAAGAATATGATGGGAGTAGCACCTTAAAGATGATTGGCGG
TGATTGCAAGATACTTGAGGACAACATCGATAAGTTTTTGGAAACTTTTA
TGACAAAAAACGAATCAAGACAAAGTAAAAGCTTCGTAAAGATGAGACAA
GTCAGCAGTTTATATCATCAATTCAAGGATTTAGCAGTATGCTCAAAAAT
TTTGTTGTTGAAACCATGTGTCCGTGTTCATTACATTGCATTCTGGCACA
TCATAGATACCTTTGGAAGTTTATGTTTATGGTAATTAGCTACAGAGGGC
AAGAGAAATTGATTCCTTTGGGGCTTAGGACAATTGGATGTGGCTATCTT
GCATATCAATATGAATGCTATCTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027517XLOC_027517Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043847-proteinTCONS_00043847-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043847-exon-sc0004662-1575043694:2066..2088TCONS_00043847-exon-sc0004662-1575043694:2066..2088Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1575043694:1318..1517TCONS_00043847-exon-sc0004662-1575043694:1318..1517Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1575043694:805..990TCONS_00043847-exon-sc0004662-1575043694:805..990Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1575043694:29..625TCONS_00043847-exon-sc0004662-1575043694:29..625Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1510915933:2066..2088TCONS_00043847-exon-sc0004662-1510915933:2066..2088Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1510915933:1318..1517TCONS_00043847-exon-sc0004662-1510915933:1318..1517Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1510915933:805..990TCONS_00043847-exon-sc0004662-1510915933:805..990Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1510915933:29..625TCONS_00043847-exon-sc0004662-1510915933:29..625Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1491911889:2066..2088TCONS_00043847-exon-sc0004662-1491911889:2066..2088Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1491911889:1318..1517TCONS_00043847-exon-sc0004662-1491911889:1318..1517Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1491911889:805..990TCONS_00043847-exon-sc0004662-1491911889:805..990Clytia hemisphaericaexon
TCONS_00043847-exon-sc0004662-1491911889:29..625TCONS_00043847-exon-sc0004662-1491911889:29..625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004662supercontigsc0004662:29..2088 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0600298	0	0.0572299	0	0	0	0	0	0.0296049	0.153725	0.0252766	0.0542513	0.0668331	0	0	0.0990329	0	0.188935	0	0	0.191171	0	0	0	0.0494072	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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