|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043901 ID=TCONS_00043901|Name=TCONS_00043901|organism=Clytia hemisphaerica|type=transcript|length=1195bp
tgaaaccTGTGTCCTGTTGAAAAGCTATTTATTCCAGCACATGCAAACAG
TAAATCCATAAGGGGGCAGAAAGGCACGGTGTGgtaaattattttaataa
ttaATCATCTTTTTTGTTAAAGTTTTGGAAGGAAACTAAAGATGGTATGA
TTTGTATTTTGAATGATGGATCACATTCTATCTATGGTCTACTCCAAAAG
NCGAcattaaattagggccggcgtaaaaagacttaaaatttaTGGcataa
aaacttaattttcgcgaggattaaatttcgcaaatttAGCGAGAGATcag
agtttgaaaatttttgtgagggattatattttgcgaaaatttgtgaaata
taatcccgcgaaaatttattccCCTAAGGTACATCATTTTTTGTGGATAT
TCTTAACACACATGTATTTTTTAGGATGGCCAGAGCGTGAAATGGACAAT
AGTTTTGGATATACTTCAATATTTTCTCAAACACAAACACAGTATTCtca
aaactttcaagttttctCTTCCTCCAGCGATCAAAACAGTCAACAACAAA
CCTCAAAAAAGTCAAATCAAAACGACACAGAACAAAATAGTCAACCTGTT
GTCTCTATCATTTCTGGCAAAAGCAATAAACATGTTCACAAAGATCTAAC
CCAAAGTAGTCAATCTGACCTATCCAGTTCTAAAGATAATGAGGCATCGA
ACACTCAgaattctaaagaaaaaaacatccaAAGTAATGAAAAAGAAGAG
AAGACCCGACAAACTGTTCCTTCAAATAATAACATCAGTGAAAACAAGAA
AAGTGataccaaatcaaaacaaaataaagcaCAACCCAATGTTAATAAGG
ACAATAGATTGAAAAAACAATATGTGGCAATAACTGAAGCTCTGCCATCG
GCGATCACCACAACCATTACCAGTAGGTTTACTGGTTTCACAGATGAATC
GGACAAATTGCAAAGTCAAGAATACCCTCCTATTATTAAAAAGGTAACTT
TACAGGAAGATGTTGTTAATGACTCTGTAGCCTCTACTGATGATGAATTA
CTTGAGTCTGAAAGTGAGCGTAACTTTCCCAACAAACAGAAAGGAAGCCA
CGATCtatcaaggaaaagaaacagATCTAATGAGTTAATTGACATGGAAG
TAGAAAAAGATCTTTCAAAATTACCGCAAAGTAGAGCAACAGAAA Run BLAST on NCBI protein sequence of TCONS_00043901-protein >TCONS_00043901-protein ID=TCONS_00043901-protein|Name=TCONS_00043901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MYFLGWPEREMDNSFGYTSIFSQTQTQYSQNFQVFSSSSDQNSQQQTSKK
SNQNDTEQNSQPVVSIISGKSNKHVHKDLTQSSQSDLSSSKDNEASNTQN
SKEKNIQSNEKEEKTRQTVPSNNNISENKKSDTKSKQNKAQPNVNKDNRL
KKQYVAITEALPSAITTTITSRFTGFTDESDKLQSQEYPPIIKKVTLQED
VVNDSVASTDDELLESESERNFPNKQKGSHDLSRKRNRSNELIDMEVEKD
LSKLPQSRATE Run BLAST on NCBI transcript from alignment at sc0004710:1..1195 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043901 ID=TCONS_00043901|Name=TCONS_00043901|organism=Clytia hemisphaerica|type=transcript|length=1195bp|location=Sequence derived from alignment at sc0004710:1..1195 (Clytia hemisphaerica)
TTTCTGTTGCTCTACTTTGCGGTAATTTTGAAAGATCTTTTTCTACTTCC
ATGTCAATTAACTCATTAGATctgtttcttttccttgataGATCGTGGCT
TCCTTTCTGTTTGTTGGGAAAGTTACGCTCACTTTCAGACTCAAGTAATT
CATCATCAGTAGAGGCTACAGAGTCATTAACAACATCTTCCTGTAAAGTT
ACCTTTTTAATAATAGGAGGGTATTCTTGACTTTGCAATTTGTCCGATTC
ATCTGTGAAACCAGTAAACCTACTGGTAATGGTTGTGGTGATCGCCGATG
GCAGAGCTTCAGTTATTGCCACATATTGTTTTTTCAATCTATTGTCCTTA
TTAACATTGGGTTGtgctttattttgttttgatttggtatCACTTTTCTT
GTTTTCACTGATGTTATTATTTGAAGGAACAGTTTGTCGGGTCTTCTCTT
CTTTTTCATTACTTtggatgtttttttctttagaattcTGAGTGTTCGAT
GCCTCATTATCTTTAGAACTGGATAGGTCAGATTGACTACTTTGGGTTAG
ATCTTTGTGAACATGTTTATTGCTTTTGCCAGAAATGATAGAGACAACAG
GTTGACTATTTTGTTCTGTGTCGTTTTGATTTGACTTTTTTGAGGTTTGT
TGTTGACTGTTTTGATCGCTGGAGGAAGagaaaacttgaaagttttgaGA
ATACTGTGTTTGTGTTTGAGAAAATATTGAAGTATATCCAAAACTATTGT
CCATTTCACGCTCTGGCCATCCTAAAAAATACATGTGTGTTAAGAATATC
CACAAAAAATGATGTACCTTAGGggaataaattttcgcgggattatattt
cacaaattttcgcaaaatataatccctcacaaaaattttcaaactctgAT
CTCTCGCTaaatttgcgaaatttaatcctcgcgaaaattaagtttttatg
CCAtaaattttaagtctttttacgccggccctaatttaatgTCGNCTTTT
GGAGTAGACCATAGATAGAATGTGATCCATCATTCAAAATACAAATCATA
CCATCTTTAGTTTCCTTCCAAAACTTTAACAAAAAAGATGATtaattatt
aaaataatttacCACACCGTGCCTTTCTGCCCCCTTATGGATTTACTGTT
TGCATGTGCTGGAATAAATAGCTTTTCAACAGGACACAggtttca Coding sequence (CDS) from alignment at sc0004710:1..1195 >TCONS_00043901 ID=TCONS_00043901|Name=TCONS_00043901|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0004710:1..1195 (Clytia hemisphaerica)
TTCTGTTGCTCTACTTTGCGGTAATTTTGAAAGATCTTTTTCTACTTCCA
TGTCAATTAACTCATTAGATctgtttcttttccttgataGATCGTGGCTT
CCTTTCTGTTTGTTGGGAAAGTTACGCTCACTTTCAGACTCAAGTAATTC
ATCATCAGTAGAGGCTACAGAGTCATTAACAACATCTTCCTGTAAAGTTA
CCTTTTTAATAATAGGAGGGTATTCTTGACTTTGCAATTTGTCCGATTCA
TCTGTGAAACCAGTAAACCTACTGGTAATGGTTGTGGTGATCGCCGATGG
CAGAGCTTCAGTTATTGCCACATATTGTTTTTTCAATCTATTGTCCTTAT
TAACATTGGGTTGtgctttattttgttttgatttggtatCACTTTTCTTG
TTTTCACTGATGTTATTATTTGAAGGAACAGTTTGTCGGGTCTTCTCTTC
TTTTTCATTACTTtggatgtttttttctttagaattcTGAGTGTTCGATG
CCTCATTATCTTTAGAACTGGATAGGTCAGATTGACTACTTTGGGTTAGA
TCTTTGTGAACATGTTTATTGCTTTTGCCAGAAATGATAGAGACAACAGG
TTGACTATTTTGTTCTGTGTCGTTTTGATTTGACTTTTTTGAGGTTTGTT
GTTGACTGTTTTGATCGCTGGAGGAAGagaaaacttgaaagttttgaGAA
TACTGTGTTTGTGTTTGAGAAAATATTGAAGTATATCCAAAACTATTGTC
CATTTCACGCTCTGGCCATCCTAAAAAATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043901-exon-sc0004710-1491911889:1..1195 | TCONS_00043901-exon-sc0004710-1491911889:1..1195 | Clytia hemisphaerica | exon |
| TCONS_00043901-exon-sc0004710-1510915933:1..1195 | TCONS_00043901-exon-sc0004710-1510915933:1..1195 | Clytia hemisphaerica | exon |
| TCONS_00043901-exon-sc0004710-1575043694:1..1195 | TCONS_00043901-exon-sc0004710-1575043694:1..1195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004710 | supercontig | sc0004710:1..1195 . |
Blast
The following BLAST results are available for this feature:
|
