TCONS_00043980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043980
Unique NameTCONS_00043980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043980 ID=TCONS_00043980|Name=TCONS_00043980|organism=Clytia hemisphaerica|type=transcript|length=428bp
NGCACAATTTTCTCTTATGGTCAAACGGGAGCTGGAAAAACATTCACAAT
GACGGgTACAACCaacaattttcaacaaagaGGAATCATACCGAGGGCAA
TCAACCAATTATTTTccgaaatcaaagaaaaatatgaaaatgacaTCACA
GTCCGTGTATCATACCTTGAAATTTACAACGAGCAAATGTTTGATCTCCT
CTCCACCATGTACGGAGGAGGGAAAGAAGCAAATCTTTCCTTCGCAGAGG
ATAATGATGGTGTGACATACGTCAAAGGATTGGCCTGTTATGTTGCCAAA
ACTGAAGAAGAAGCACTCAATTATCTTTTCGAGGTAAGGAAggcgatttt
tttttctcaaactatCAACAAATATGGTATTTTTATCTCCTCAAAATGTA
TTGATATTCATTCTGATCTAAGATGAAG
Run BLAST on NCBI

protein sequence of TCONS_00043980-protein

>TCONS_00043980-protein ID=TCONS_00043980-protein|Name=TCONS_00043980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
XTIFSYGQTGAGKTFTMTGTTNNFQQRGIIPRAINQLFSEIKEKYENDIT
VRVSYLEIYNEQMFDLLSTMYGGGKEANLSFAEDNDGVTYVKGLACYVAK
TEEEALNYLFEVRKAIFFSQTINKYGIFISSKCIDIHSDLR
Run BLAST on NCBI

transcript from alignment at sc0004803:118..1025-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043980 ID=TCONS_00043980|Name=TCONS_00043980|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at sc0004803:118..1025- (Clytia hemisphaerica)
NGCACAATTTTCTCTTATGGTCAAACGGGAGCTGGAAAAACATTCACAAT
GACGGGTGATTATGGTTTCACATTTTTTCTAATTTTCATCCTGCACAGTA
ATTCAACTACCGCCCATTTGTGCAAAAAGGTGCACGAAGCTTGAGTTTAT
ACAGGGTGAAAGACTTGGAATGTCTGAGTCATTACACCGATGCATTTTAC
GTCANCCACAGCAATTCAACTACCACCCATTTGTGCAAAAAGGTGCACGA
AGCTTGAGTTTATACAGGGTGAAAGACTTGGAATGTCTGAGTCATTACAC
CGATGCATTTTACGTCATTAAAGGCTTGTAAACTGGAAGCTAATCATCTT
GTCACTAAAGGGTTAAAAGGTGGATTTGAAATAAAACTGCTCCACCTTTT
TATGGACACACTGTAGTTGCAAGATTCACTTTTTTGAAAATGTTATCTTT
ATTTCCATCAACCGCTCATGCAATGACGAAATTCTATCACAGAATTTCAG
AATTTAATACCATCTAAATGTTTCTTTCTTTAAAGGTACAACCAACAATT
TTCAACAAAGAGGAATCATACCGAGGGCAATCAACCAATTATTTTCCGAA
ATCAAAGAAAAATATGAAAATGACATCACAGTCCGTGTATCATACCTTGA
AATTTACAACGAGCAAATGTTTGATCTCCTCTCCACCATGTACGGAGGAG
GGAAAGAAGCAAATCTTTCCTTCGCAGAGGATAATGATGGTGTGACATAC
GTCAAAGGATTGGCCTGTTATGTTGCCAAAACTGAAGAAGAAGCACTCAA
TTATCTTTTCGAGGTAAGGAAGGCGATTTTTTTTTCTCAAACTATCAACA
AATATGGTATTTTTATCTCCTCAAAATGTATTGATATTCATTCTGATCTA
AGATGAAG

Coding sequence (CDS) from alignment at sc0004803:118..1025-

>TCONS_00043980 ID=TCONS_00043980|Name=TCONS_00043980|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0004803:118..1025- (Clytia hemisphaerica)
GTACAACCAACAATTTTCAACAAAGAGGAATCATACCGAGGGCAATCAAC
CAATTATTTTCCGAAATCAAAGAAAAATATGAAAATGACATCACAGTCCG
TGTATCATACCTTGAAATTTACAACGAGCAAATGTTTGATCTCCTCTCCA
CCATGTACGGAGGAGGGAAAGAAGCAAATCTTTCCTTCGCAGAGGATAAT
GATGGTGTGACATACGTCAAAGGATTGGCCTGTTATGTTGCCAAAACTGA
AGAAGAAGCACTCAATTATCTTTTCGAGGTAAGGAAGGCGATTTTTTTTT
CTCAAACTATCAACAAATATGGTATTTTTATCTCCTCAAAATGTATTGAT
ATTCATTCTGATCTAAGATGANGCACAATTTTCTCTTATGGTCAAACGGG
AGCTGGAAAAACATTCACAATGACGGGTACAACCAACAATTTTCAACAAA
GAGGAATCATACCGAGGGCAATCAACCAATTATTTTCCGAAATCAAAGAA
AAATATGAAAATGACATCACAGTCCGTGTATCATACCTTGAAATTTACAA
CGAGCAAATGTTTGATCTCCTCTCCACCATGTACGGAGGAGGGAAAGAAG
CAAATCTTTCCTTCGCAGAGGATAATGATGGTGTGACATACGTCAAAGGA
TTGGCCTGTTATGTTGCCAAAACTGAAGAAGAAGCACTCAATTATCTTTT
CGAGGTAAGGAAGGCGATTTTTTTTTCTCAAACTATCAACAAATATGGTA
TTTTTATCTCCTCAAAATGTATTGATATTCATTCTGATCTAAGATGANGC
ACAATTTTCTCTTATGGTCAAACGGGAGCTGGAAAAACATTCACAATGAC
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027640XLOC_027640Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043980-proteinTCONS_00043980-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043980-exon-sc0004803-1575043694:971..1025TCONS_00043980-exon-sc0004803-1575043694:971..1025Clytia hemisphaericaexon
TCONS_00043980-exon-sc0004803-1575043694:118..490TCONS_00043980-exon-sc0004803-1575043694:118..490Clytia hemisphaericaexon
TCONS_00043980-exon-sc0004803-1510915933:971..1025TCONS_00043980-exon-sc0004803-1510915933:971..1025Clytia hemisphaericaexon
TCONS_00043980-exon-sc0004803-1510915933:118..490TCONS_00043980-exon-sc0004803-1510915933:118..490Clytia hemisphaericaexon
TCONS_00043980-exon-sc0004803-1491911889:971..1025TCONS_00043980-exon-sc0004803-1491911889:971..1025Clytia hemisphaericaexon
TCONS_00043980-exon-sc0004803-1491911889:118..490TCONS_00043980-exon-sc0004803-1491911889:118..490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004803supercontigsc0004803:118..1025 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.42394	9.47846	4.76901	3.58902	56.8008	38.3247	18.7448	25.543	18.4293	27.7314	22.9777	25.4621	3.12447	1.79023	1.28784	1.28333	0.486448	1.62043	1.03325	1.62183	3.28922	2.06276	5.94383	4.22172	8.87048	5.58825	7.10824	7.11198	2.33748	3.48068
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00043980 vs. Swiss-Prot (Human)
Match: KIF9 (Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 PE=1 SV=4)

HSP 1 Score: 124.405 bits (311), Expect = 4.483e-33
Identity = 67/135 (49.63%), Postives = 89/135 (65.93%), Query Frame = 1 
Query:    4 TIFSYGQTGAGKTFTMTGTTNNFQQRGIIPRAINQLFSEIKEKYENDITVRVSYLEIYNEQMFDLLSTM-YGGGKEANLSFAEDNDGVTYVKGLACYVAKTEEEALNYLFEVR-KAIFFSQTINKYGIFISSKCI 402
            TI  YGQTGAGKT+TM G T N++ RGI+PRA+ Q+F  I+E+  + ITVRVSYLEIYNE +FDLLST+ Y G     ++  E+  GV ++KGL+ ++   EE+A + LFE     I  S T+NK      S CI
Sbjct:   88 TIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGV-FIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNS--SRSHCI 219
The following BLAST results are available for this feature:
BLAST of TCONS_00043980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF94.483e-3349.63Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 ... [more]
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