TCONS_00043990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043990
Unique NameTCONS_00043990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043990 ID=TCONS_00043990|Name=TCONS_00043990|organism=Clytia hemisphaerica|type=transcript|length=984bp
CAAGTTCAACCCAAAAACTTGATCATTGCGATTGATATGGATCCAGAACA
ATGgaaGAAGCTCCCTCTGGCAGAGCAACAAAAAATAATTgctcaaaaaa
gGGCACAACTAAATAAAACACAACAACAGTTGATCACTATTGCCATAAAG
AAACCACCAACCCCAATTGTGCCTGGACAAAGAGTCGTATTGAATTCAGC
TTCAGGGTCCATAGGGCCACAGAAACCAAAAATTTCATATCCTAACAAAC
CACTGGTTCAGCCTCCCGGCATGCCAACTGGATCTCTACTTCCAAAATCA
GGAGGTCCTATTGCAAATTCTGGCGCTTACTCCTTTACTGATCTCATTTC
TGAGAAAAAGCATGAGAGTGAAGTTTCTGGTTTAAGACCACTACCAAAAT
TGAAGAAAGTCCATCTACCAGAATCATTAGAATACAAAAGTTTCGGCAGT
ATTTTAATGATCACAGAATTTGTTGACATTTTCAAAGGATTTCTGATGAC
CGATGAAAATTTTCCCATCAAAACAGaTGAGATCATTGAAGCTGTGTCTC
AAAAGAAGGAATCAGAAACAGTGCTCAAGATTTTATTGTACTTCTTGAAG
GTTTTGTTAGGAAATGAATGTTACAAAATCAAGAGTCTGAAGATTGAATT
AGCTGATTTACCACTGACCGAGTTCACAGTATCCTTTCTGGTAGAGCAAT
TCTTAAAAAGTTACATAGATaagaaaaagaagcaaaaacagGCTGAAGAA
ATGGCGGCCAAATATTCAAAGTTAACAGAAAGTGGAGAAGATACTGAAAC
AGATATGGATGGTGACGATGAACCATTTGAACCACCAACCGATGAACCCA
TTTTCTTGGATAGTGAAGACGAAGATGAATACTATGGTTATAGCCTCAAA
CCGAAACAATCGAAAAAaaaaaaaaagcCAAAGGGAACGCTTACCAGATA
TATGATTGAAGAAAATCGTACCTTGGAAAAGGTA
Run BLAST on NCBI

transcript from alignment at sc0004811:1..5408+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043990 ID=TCONS_00043990|Name=TCONS_00043990|organism=Clytia hemisphaerica|type=transcript|length=5408bp|location=Sequence derived from alignment at sc0004811:1..5408+ (Clytia hemisphaerica)
CAAGTTCAACCCAAAAACTTGATCATTGCGATTGATATGGATCCAGAACA
ATGGTAGGGTCACAAGTTTTTATCAACAGCGGACTTGATGTGTTTGTTTA
Ctaatctttttattcattcattcattcattcattcattcattcattcatc
atATAATCTGTCCTGGTCTGGAAAGTCTGGAAGCCTATTGTTGTAtgctt
ttgttattctttttatttttcaataacaaaatttgaagatttacTTAGTG
AAAACTGATTTGCTGATGCAGATAATCCATGATTCAATGTTTTGCTTAGC
TGTAACAAAGTCTCAAAGAATTTTTAATTGAATTCTGAAAGGTTCAGACA
TACTAAAAGCTGCAGTAAAAAGTATAAGCTtgtatatagtgaagatatgt
caTTGTAGANATTCAATGTTTTGCTTAGCTGTAACAAAGTCTCAAAGAAT
TTTTAATTGAATTCTGAAAGGTTCAGACATACTAAAAGCTGCAGTAAAAA
GTATAAGCTtgtatatagtgaagatatgtcaTTGTAGaagaagaaaagta
ttgatgtataaataactcaaactgataaaacgaaaaaagtgaagaatata
ttttttaactATGTATATTATATATGTCAGTTTTTAAGTTACCTGTGGCT
GCATCAATTCTTCATGAAATATAAGGCTGAAAAGtagctttttgattttt
aggaaGAAGCTCCCTCTGGCAGAGCAACAAAAAATAATTgctcaaaaaag
gtaaattaaTTTGTAATTATGAATTAATTCTGTTCTGACTGATCTATTTT
TGCATTATAAAAACTCTGCCAATGAAAGTCTTTACATTTCGCCTAATAAC
CCTTTTATCTGCCCTCCCTGCTCGTATAGAATAAATTTATGGCAGATCAG
ATTGGGTCGGAAGagcaaaaatgaataaaatttttgtttattgttATAAA
TTTCTTGTTTGAAGTCTGGCTTAAAGCTGATGTTTTTTATTAAATACTTT
AGGGCACAACTAAATAAAACACAACAACAGTTGATCACTATTGCCATAAA
GAAACCACCAACCCCAATTGTGCCTGGACAAAGAGTCGTATTGAATTCAG
CTTCAGGGTCCATAGGGCCACAGAAACCAAAAATTTCATATCCTAACAAA
CCACTGGTTCAGCCTCCCGGCATGTCAACTGGATCTCTACTTCCAAAATC
AGGAGGTCCTATTGCAAATTCTGGCACCTACTCCTTTACTGATCTCATTT
CTGAGGTAAGTTTAATTTCCATTCTGGGAAATGTGCTTCTAGGTCTCACC
CTTTGGTCCCAAAAGAGAGAGATGTAACTTGCTCTCTCAAAATAGCTCTG
TTGCAGAATATTTATAATTGCAGAATCACTTCCATCTATGAGGTAGAGAC
AAGCCACTTGTCCTActatgaaataatcaaaaaacaaaaaaaaagtgatg
agatcagattttcatttttccaagacCCTCATTTTAAGACCGAACATTTA
GTAATGTGAACACAAATTGAAAAATCCTTTTTATCACAAACTCTTGTTCT
AGAAAAAGCATGAGAGTGAAGTTTCTGGTTTAAGACCACTACCAAAATTG
AAGAAAGTCCATCTACCAGAATCATTAGAATACAAAAGTTTCGGCAGTAT
TTTAATGATCACAGAATTTGTTGACATTTTCAAAGGATTTCTGATGACTG
ATGAAAATTTTCCCATCAAAACAGGTATGATTTGTGAAGAAATGCATCAa
ttcttgttttttctatttcCTCTTTATTTGCTATAGGTTTCTTTTTTATA
GGGCtacattttttctttctgtttattgaaATTTGGTCAGTCAAAATTTG
TTACTAGGAATAGGATTGACCTTTTGAATAAGATAGTTTGTAAATTAATT
TCTAATCTTCACTGTTCCTTCCAGATTCACCAAAGGATCTAAAAACTCAA
GACATTGCATGAAATCCTTCAAGTAACActgattttatttgctttttgtt
gtttttcagaTGAGATCATTGAAGCTGTGTCTCAAAAGAAGGAATCAGAA
ACAGTGCTCAAGATTTTATTGTACTTCTTGAAGGTTTTGTTAGGAAATGA
ATGTTACAAAGTATGCCCCATGAGTCATATGTTTTTTACTATAAAATGAG
AATTATTTCCTCTGAACTGTAATAGTTTGTTGATTCAGTATaacatttca
tatttttgacatttttcttttttcttaccTTAGTTGCCTTTTATTTTACA
CgtctaattttaattttgataaaataattaataaGAGATTTAAGGTATAA
TNAACTGATAAAAcgaaaaaagtgaagaatatattttttaattatgtaTA
TTATATATGTCAGTTTTTAAGTTACCTGTGGCTGCATCAATTCTTCATGA
AATATAAGGCTGAAAAGtagctttttgatttttaggaaGAAGCTCCCTCT
GGCAGAGCAACAAAAAATAATTgctcaaaaaaggtaaattaaTTTGTAAT
TATGAATTAATTCTGTTCTGACTGATCTATTTTTACATTATAAAAACTCT
GCCAATGAAAGTCTTTACATTTCGCCTAATAACCCTTTTATCTGCCCTCC
CTGCTCGTATAGAATAAATTTATGGCAGATCAGATTGGGTCGGAAGagca
aaaatgaataaaatttttgtttattgttATAAATTTCTTGTTTGAAGTCT
GGCTTAAAGCTGATGTTTTTTATTAAATACTTTAGGGCACAACTAAATAA
AACACAACAACAGTTGATCACTATTGCCATAAAGAAACCACCAACCCCAA
TTGTGCCTGGACAAAGAGTCGTATTGAATTCAGCTTCAGGGTCCATAGGG
CCACAGAAACCAAAAATTTCATATCCTAACAAACCACTGGTTCAGCCTCC
CGGCATGCCAACTGGATCTCTACTTCCAAAATCAGGAGGTCCTATTGCAA
ATTCTGGCGCTTACTCCTTTACTGATCTCATTTCTGAGGTAAGTTTAATT
TCCATTCTGGGAAATGTGCTTCTAGGTCTCACCCTTTGGTCCCAAAAGAG
AGAGATGTAACTTGCTCTCTCAAAATAGCTCTGTTGCAGAATATTTATAA
TTGCAGAATCACTTCCATCTATGAGGTAGAGACAAGCCACTTGTCCTAct
atgaaataatcaaaaaacaaaaaaaaagtgatgagatcagattttcattt
ttccaagacCCTCATTTTAAGACCGAACATTTAGTAATGTGAACACAAAT
TGAAAAATCCTTTTTATCACAAACTCTTGTTCTAGAAAAAGCATGAGAGT
GAAGTTTCTGGTTTAAGACCACTACCAAAATTGAAGAAAGTCCATCTACC
AGAATCATTAGAATACAAAAGTTTCGGCAGTATTTTAATGATCACAGAAT
TTGTTGACATTTTCAAAGGATTTCTGATGACCGATGAAAATTTTCCCATC
AAAACAGGTATGATTTGTGAAGAAATGCATCAattcttgttttttctatt
tcCTCTTTATTTGCTATAGGTTTCTTTTTTATAGGGCtacattttttctt
tctgtttattgaaATTTGGTCAGTCAAAATTTGTTACTAGGAATAGGATT
GACCTTTTGAATAAGATAGTTTGTAAATTAATTTCTAATCTTCACTGTTC
CTTCCAGATTCACCAAAGGATCTAAAAACTCAAGACATTGCATGAAATCC
TTCAAGTAACActgattttatttgctttttgttgtttttcagaTGAGATC
ATTGAAGCTGTGTCTCAAAAGAAGGAATCAGAAACAGTGCTCAAGATTTT
ATTGTACTTCTTGAAGGTTTTGTTAGGAAATGAATGTTACAAAGTATGCC
CCATGAGTCATATGTTTTTTACTATAAAATGAGAATTATTTCCTCTGAAC
TGTAATAGTTTGTTGATTCAGTATaacatttcatatttttgacatttttc
ttttttcttaccTTAGTTGCCTTTTATTTTACACgtctaattttaatttt
gataaaataattaataaGAGATTTAAGGTATAATTCTAAAGgatgaaaaa
caaagaagaaaaaatggtAGATTGATAATTACCGAATACAAAATATTATT
TGCTTTAGATCAAGAGTCTGAAGATTGAATTAGCTGATTTACCACTGACC
GAGTTCACAGTATCCTTTCTGGTAGAGCAATTCTTAAAAAGTTACATAGA
TaagaaaaagaagcaaaaacagGCTGAAGAAATGGCGGCCAAATATTCAA
AGTTAACAGAAAGTGGAGAAGATACTGAAACAGATATGGATGGTGACGAT
GAACCATTTGAACCACCAACCGATGAACCCATTTTCTTGGATAGTGAAGA
CGAAGATGAATACTATGGTTATAGCCTCAAACCGAAACAATCGAAAAAag
tgagaatttttttcttaaaagaaaatgCATAATTTTGAGATGTAGATAGG
GGTCTGCTTGGAAGGGTGATAGATAAATGACTTTAATTGTTAGGGGAACT
GGTTTTTGTAACACCCTATTTCGCGAATCACATGAAATTTATTATTAAAA
TTTAATGAAGTTTTTTAGTAATCAACCTCCTTTATAAAGATTATTTAGAA
AGGATGTTTtaacttttgatttgttttataATGTCCAGGTGTTGGGATGC
CACTTTGAGAATGGCAGGGCCTtgatatagtgactaaggagacCATGGAT
AGAATTCTAAAGTTAAATATATATtaagataccttaagggaagaaatttt
tgcggaatttaatttcgcgaatcagattttcaaaatggcaaatttcgcgg
aatttaatttcgcgaatgagccgatttcaaaagtttaacggaatttaatt
tcgtgatttagaagaagttatcaacttagattaacttttaagcatatcac
ggagttgtttattatttgataaaaaatacacgttataatgcttaaaaatc
aattgtgtccatcttttttggtaacacctggtcaaaaacaacaaaataaa
agaagaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtgataaaaaatacacgttataatgcttaaaaatcaattg
tgtccatcttttttggtaacacctggtcaaaaacaacaaaataaaagaag
aagaaaaaaatcgaaattcgcggaatttaatttcgcgatttaacaatttt
ggtgtgtttcgcagaatttaattttgtgaatTACGCCCCAATtggcgaaa
ttaaattccgcgaaaatttcttctcttaaggtcagcttttttatcaaaat
tattgtGACGTTTGCCTAACAACAAAGTGTGttgttttacagaaaaaaaa
gcCAAAGGGAACGCTTACCAGATATATGATTGAAGAAAATCGTACCTTGG
AAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027648XLOC_027648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043990-exon-sc0004811-1491911889:1..53TCONS_00043990-exon-sc0004811-1491911889:1..53Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:1..53TCONS_00043990-exon-sc0004811-1510915933:1..53Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:1..53TCONS_00043990-exon-sc0004811-1575043694:1..53Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1491911889:703..750TCONS_00043990-exon-sc0004811-1491911889:703..750Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:703..750TCONS_00043990-exon-sc0004811-1510915933:703..750Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:703..750TCONS_00043990-exon-sc0004811-1575043694:703..750Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1491911889:2736..2988TCONS_00043990-exon-sc0004811-1491911889:2736..2988Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:2736..2988TCONS_00043990-exon-sc0004811-1510915933:2736..2988Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:2736..2988TCONS_00043990-exon-sc0004811-1575043694:2736..2988Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1491911889:3286..3457TCONS_00043990-exon-sc0004811-1491911889:3286..3457Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:3286..3457TCONS_00043990-exon-sc0004811-1510915933:3286..3457Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:3286..3457TCONS_00043990-exon-sc0004811-1575043694:3286..3457Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1491911889:3743..3843TCONS_00043990-exon-sc0004811-1491911889:3743..3843Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:3743..3843TCONS_00043990-exon-sc0004811-1510915933:3743..3843Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:3743..3843TCONS_00043990-exon-sc0004811-1575043694:3743..3843Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1491911889:4109..4399TCONS_00043990-exon-sc0004811-1491911889:4109..4399Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:4109..4399TCONS_00043990-exon-sc0004811-1510915933:4109..4399Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:4109..4399TCONS_00043990-exon-sc0004811-1575043694:4109..4399Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1491911889:5343..5408TCONS_00043990-exon-sc0004811-1491911889:5343..5408Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1510915933:5343..5408TCONS_00043990-exon-sc0004811-1510915933:5343..5408Clytia hemisphaericaexon
TCONS_00043990-exon-sc0004811-1575043694:5343..5408TCONS_00043990-exon-sc0004811-1575043694:5343..5408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004811supercontigsc0004811:1..5408 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26569	2.91754	2.90335	2.63586	14.5878	11.6018	5.98234	4.698	1.57672	2.63119	1.77456	1.47779	1.57165	1.79904	1.67478	2.37513	2.81971	2.96884	1.22014	1.98214	2.73183	3.29305	5.13253	4.79307	4.97419	3.92581	2.27245	2.20262	4.64978	7.68538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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