TCONS_00043993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043993
Unique NameTCONS_00043993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043993 ID=TCONS_00043993|Name=TCONS_00043993|organism=Clytia hemisphaerica|type=transcript|length=648bp
tggaaaatgaaaataatgctatgctatttttctttttttcagatctttaa
aaaatgtttatattCCTCCATGAAAGGTAACAGAATGATGgaagaacaac
aaatttaatttatgaTTTTATAATTGGTGTGGATGGACTGGTGGAAATGA
TAGATTATGGAAATCATGGAATATTTTACAAGAAAATGCTGACATCTTGG
ATCTTTTACATGAAAGTGATTGCTTCTTAGATCATGTATTCGATATTATT
TCTGCTTTCCCAGTAGCCCAGAGCCCAGTGCAAGTCACCAAGGTCACAGT
TAGTTTTACATTCTATAATAACAGAGGGATGGATCAACAAAGTGGAGGAA
CAATAATAAACTATAAATAATTTGACTGTGGAATGATGTAAATACCAAGG
GAAAAATGGAAATAGTGGAAATATCAATCACACCTCAAGCTTCTTCCCTC
TACAGTATTGTATTTACATATTATATATACATATGCATGTGTGTGTCATG
CCCAAGACCTTCATTCATTTGATCAAAACCATCACGCAAACTGCCAAACA
GGCAGTTATTAACCAATCAGTGCTCAGAAAAAGCGTTTGATTGTTGAGCa
gacttttggattgttaaccCGCCCTAACCACAGTACTAATATGTATCC
Run BLAST on NCBI

transcript from alignment at sc0004816:1..648

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043993 ID=TCONS_00043993|Name=TCONS_00043993|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0004816:1..648 (Clytia hemisphaerica)
GGATACATATTAGTACTGTGGTTAGGGCGggttaacaatccaaaagtctG
CTCAACAATCAAACGCTTTTTCTGAGCACTGATTGGTTAATAACTGCCTG
TTTGGCAGTTTGCGTGATGGTTTTGATCAAATGAATGAAGGTCTTGGGCA
TGACACACACATGCATATGTATATATAATATGTAAATACAATACTGTAGA
GGGAAGAAGCTTGAGGTGTGATTGATATTTCCACTATTTCCATTTTTCCC
TTGGTATTTACATCATTCCACAGTCAAATTATTTATAGTTTATTATTGTT
CCTCCACTTTGTTGATCCATCCCTCTGTTATTATAGAATGTAAAACTAAC
TGTGACCTTGGTGACTTGCACTGGGCTCTGGGCTACTGGGAAAGCAGAAA
TAATATCGAATACATGATCTAAGAAGCAATCACTTTCATGTAAAAGATCC
AAGATGTCAGCATTTTCTTGTAAAATATTCCATGATTTCCATAATCTATC
ATTTCCACCAGTCCATCCACACCAATTATAAAAtcataaattaaatttgt
tgttcttcCATCATTCTGTTACCTTTCATGGAGGaatataaacatttttt
aaagatctgaaaaaaagaaaaatagcatagcattattttcattttcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027651XLOC_027651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043993-exon-sc0004816-1491911889:1..648TCONS_00043993-exon-sc0004816-1491911889:1..648Clytia hemisphaericaexon
TCONS_00043993-exon-sc0004816-1510915933:1..648TCONS_00043993-exon-sc0004816-1510915933:1..648Clytia hemisphaericaexon
TCONS_00043993-exon-sc0004816-1575043694:1..648TCONS_00043993-exon-sc0004816-1575043694:1..648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004816supercontigsc0004816:1..648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27592	1.17844	0.392292	0.179042	7.33263	4.45396	7.82825	8.60181	9.22537	10.7183	9.28835	10.0148	5.3995	5.16372	7.67087	7.10742	10.7349	10.3886	4.35722	5.77132	12.383	9.49773	3.44945	3.50422	4.39727	5.53898	4.8387	3.26739	3.29119	3.36673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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