TCONS_00044000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044000
Unique NameTCONS_00044000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044000 ID=TCONS_00044000|Name=TCONS_00044000|organism=Clytia hemisphaerica|type=transcript|length=698bp
TTTGTACCTCTGATAAGTTCCAAGTCTGGCATGAGTATGTGAGACGACTT
CTAACAAGCGAGTTGAAGATCATTACTCTTGTGCTTAGATGGATCTTGAA
GTTTGTAAGCTTCTTTATAATTTCGTAAAACTTGGCTTGTGCGATATTGA
TCCGTAGGTCAATCTCGGCATCTCCCGTAGACGGCTCGTCGTATTTTACT
CNCTTGTGCTTAGATGGATCTTGAAGTTTGTAAGCTTCTTTATAATTTCG
TAAAACTTGGCTTGTGCGATATTGATTCGTAGGTCAATCTCGGCATCTCC
CGTAAACGGCTCGTCGTATTTTACTTCATCACCAAGATACTTGAACACCT
TGACATTTTCGATTGGTATATTTTCGAGAGAAACGATAGACACAGGATAG
ACAGAATCAAAGTCTTTTTCGatatatttgaaattaaaaatcattGTTTT
AGTCTTTTTAATATTGATGTGCAATCCAAATTTGTTGAATAATGAATGGA
GAATATTTAGGGCTTTTTCAAGATCGtgaacattttcaagaaaaagttcA
ATATCGTCGGCATATCCTGACCAATTCACATAATGATCACCTTGATATCC
AGACCTTCTTTGTTCACGTGTGCATGCAGTCGGACGTATTCTGTATTTTA
GTTTAACAAATTGGATATTCTCTTGAGCACATTTTTGTTCGAACACCC
Run BLAST on NCBI

protein sequence of TCONS_00044000-protein

>TCONS_00044000-protein ID=TCONS_00044000-protein|Name=TCONS_00044000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
VFEQKCAQENIQFVKLKYRIRPTACTREQRRSGYQGDHYVNWSGYADDIE
LFLENVHDLEKALNILHSLFNKFGLHINIKKTKTMIFNFKYIEKDFDSVY
PVSIVSLENIPIENVKVFKYLGDEVKYDEPFTGDAEIDLRINIAQAKFYE
IIKKLTNFKIHLSTXE
Run BLAST on NCBI

transcript from alignment at sc0004829:812..1509

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044000 ID=TCONS_00044000|Name=TCONS_00044000|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at sc0004829:812..1509 (Clytia hemisphaerica)
GGGTGTTCGAACAAAAATGTGCTCAAGAGAATATCCAATTTGTTAAACTA
AAATACAGAATACGTCCGACTGCATGCACACGTGAACAAAGAAGGTCTGG
ATATCAAGGTGATCATTATGTGAATTGGTCAGGATATGCCGACGATATTg
aactttttcttgaaaatgttcaCGATCTTGAAAAAGCCCTAAATATTCTC
CATTCATTATTCAACAAATTTGGATTGCACATCAATATTAAAAAGACTAA
AACaatgatttttaatttcaaatatatCGAAAAAGACTTTGATTCTGTCT
ATCCTGTGTCTATCGTTTCTCTCGAAAATATACCAATCGAAAATGTCAAG
GTGTTCAAGTATCTTGGTGATGAAGTAAAATACGACGAGCCGTTTACGGG
AGATGCCGAGATTGACCTACGAATCAATATCGCACAAGCCAAGTTTTACG
AAATTATAAAGAAGCTTACAAACTTCAAGATCCATCTAAGCACAAGNGAG
TAAAATACGACGAGCCGTCTACGGGAGATGCCGAGATTGACCTACGGATC
AATATCGCACAAGCCAAGTTTTACGAAATTATAAAGAAGCTTACAAACTT
CAAGATCCATCTAAGCACAAGAGTAATGATCTTCAACTCGCTTGTTAGAA
GTCGTCTCACATACTCATGCCAGACTTGGAACTTATCAGAGGTACAAA

Coding sequence (CDS) from alignment at sc0004829:812..1509

>TCONS_00044000 ID=TCONS_00044000|Name=TCONS_00044000|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0004829:812..1509 (Clytia hemisphaerica)
GTGTTCGAACAAAAATGTGCTCAAGAGAATATCCAATTTGTTAAACTAAA
ATACAGAATACGTCCGACTGCATGCACACGTGAACAAAGAAGGTCTGGAT
ATCAAGGTGATCATTATGTGAATTGGTCAGGATATGCCGACGATATTgaa
ctttttcttgaaaatgttcaCGATCTTGAAAAAGCCCTAAATATTCTCCA
TTCATTATTCAACAAATTTGGATTGCACATCAATATTAAAAAGACTAAAA
CaatgatttttaatttcaaatatatCGAAAAAGACTTTGATTCTGTCTAT
CCTGTGTCTATCGTTTCTCTCGAAAATATACCAATCGAAAATGTCAAGGT
GTTCAAGTATCTTGGTGATGAAGTAAAATACGACGAGCCGTTTACGGGAG
ATGCCGAGATTGACCTACGAATCAATATCGCACAAGCCAAGTTTTACGAA
ATTATAAAGAAGCTTACAAACTTCAAGATCCATCTAAGCACAAGNGAGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027657XLOC_027657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044000-proteinTCONS_00044000-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044000-exon-sc0004829-1491911889:812..1509TCONS_00044000-exon-sc0004829-1491911889:812..1509Clytia hemisphaericaexon
TCONS_00044000-exon-sc0004829-1510915933:812..1509TCONS_00044000-exon-sc0004829-1510915933:812..1509Clytia hemisphaericaexon
TCONS_00044000-exon-sc0004829-1575043694:812..1509TCONS_00044000-exon-sc0004829-1575043694:812..1509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004829supercontigsc0004829:812..1509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200134	0.171269	0.44215	0.919051	0.107965	0.230483	0.373573	0.555449	0.754008	0.128229	0	0.412201	0.216796	0.0692552	0.496435	0.1846	0.263693	0.519537	0.344507	0.564933	1.6638	1.44413	0	0.226885	0	0.13904	0.240827	0.771051	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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