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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044021 ID=TCONS_00044021|Name=TCONS_00044021|organism=Clytia hemisphaerica|type=transcript|length=1799bp
tgaaaataatttgatgatttttaaaagatccttctagaatttttcaacaa
acgtATCCTGTGAAAAAAGACCCTATTTCAATCATTAAGTCCTTAAAACA
ATAACACACCTGATGTGTAGTTTATAGTAATAAAATGTAGTCTTTCtcgt
cattgttttgattctgtagttttgaaatattacagtaaatgtgaCATTAT
AATATAGACTTTTTGATAGTTTAGGATGTCATAACTAAAtaataaaatcc
atttttacaaaaatttataactaatttataattcactactagttttcata
cattcatgcaatcaaaaaagcaaatcatgcaatgacttcaaacccCTTGA
AACATTCCAATATTATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTActagttttcatacattcatgcaatcaaaaaagca
aatcatgcaatgacttcaaacccCTTGAAACATTCCAATATTATAAGGCA
GCGATCACGAACCTCTCCATGCATTTCATTTTGCCAGTGACATGTTCaag
aattttgaggaaaattctGTGAAAGAGCTTATTTTATTTGCAAATCATTT
AAAGTGTTTGACCACCAGCAgcagtgaatttgaaattttctactatgact
taaaaagattaaaaataaaatggaagtgtatTTTCTGATTGCTGCCTTAA
CATGTAAAATTTAATGTCATTAAATTAAGCATCACATGTCACACACAAAA
CATCCCACCATGTACcaccaaaacattcacaatttgtCCCCCTTCTAGTG
CTGTCTAGTGTTGCATTATATTATACGTAGCTACATAATATTAATATTGA
ATCTTGATGGGAATCTGGTAATGTTTGCGTTTGCCTGATCTCAAACTACA
ACAAAGTCTTTCTTATGTCGTTTTAAATAATAGACCTTACTGTATAGGTG
ggagttttaaatttttctaaaaaagcgatgtgtattacaatagaattccc
tggAGGAGTGTTCCTAAGAGATATTATTTGCaataatacactcgaaacaa
tccctcaatgcatcgcttttttagaaaagtcaaaaactctgataaggcCC
ATTAAAAAATAACGTGTCAGTTCTTCGCAGCATACCTCCTCAACAAATGT
TACTGACCACAATCACCCAATATTCGATGGCGTATGCATGATCTTTTTCG
TATAAAAGCGTTTACCTACCCAAATACGTTGAAACGTGTATTGACAACAT
GACAAAATAATCATTGTTCGGCTGAATGTAAAGTTTAACCATGACAtgac
atttccaataaaattataaagtctaaatgttaaattatttcgaaatccaa
atgttgctttaaatctgacttgactATTGCAGATATTTTGGTTTGATCTC
AACaagccataaaaatagttttcaatgagatcaattgatgtaataggaat
ggttactccaatcaattgtcacaaaaatgtgccatgcagtatggatgcca
caaggtaaacaaccatctgtcaaaccattatcgaaaatttcagttgacaa
caaaagaaaacagccaCGCACATTGTCACATTACTGTGTGGATGGTAGGA
CAGCTCTCCTCTCCCAGACTCCAGAGGTAGTGgtaaaaaacctcaagaat
gatactcgCGTAAAATCTACAAtaagtgtgaacagcagcaacgttatttt
acaagcaaaagagggtcgttgtaaaacatggattagctccatggagtact
cCAATGGAGTACCTAATGGAGTACCCCCTAAAATACCTGTCAGAGCGAT Run BLAST on NCBI protein sequence of TCONS_00044021-protein >TCONS_00044021-protein ID=TCONS_00044021-protein|Name=TCONS_00044021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MCHAVWMPQGKQPSVKPLSKISVDNKRKQPRTLSHYCVDGRTALLSQTPE
VVVKNLKNDTRVKSTISVNSSNVILQAKEGRCKTWISSMEYSNGVPNGVP
PKIPVRA Run BLAST on NCBI transcript from alignment at sc0004857:1..1799 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044021 ID=TCONS_00044021|Name=TCONS_00044021|organism=Clytia hemisphaerica|type=transcript|length=1799bp|location=Sequence derived from alignment at sc0004857:1..1799 (Clytia hemisphaerica)
ATCGCTCTGACAGGTATTTTAGGGGGTACTCCATTAGGTACTCCATTGga
gtactccatggagctaatccatgttttacaacgaccctcttttgcttgta
aaataacgttgctgctgttcacacttaTTGTAGATTTTACGcgagtatca
ttcttgaggttttttacCACTACCTCTGGAGTCTGGGAGAGGAGAGCTGT
CCTACCATCCACACAGTAATGTGACAATGTGCGtggctgttttcttttgt
tgtcaactgaaattttcgataatggtttgacagatggttgtttaccttgt
ggcatccatactgcatggcacatttttgtgacaattgattggagtaacca
ttcctattacatcaattgatctcattgaaaactatttttatggcttGTTG
AGATCAAACCAAAATATCTGCAATagtcaagtcagatttaaagcaacatt
tggatttcgaaataatttaacatttagactttataattttattggaaatg
tcaTGTCATGGTTAAACTTTACATTCAGCCGAACAATGATTATTTTGTCA
TGTTGTCAATACACGTTTCAACGTATTTGGGTAGGTAAACGCTTTTATAC
GAAAAAGATCATGCATACGCCATCGAATATTGGGTGATTGTGGTCAGTAA
CATTTGTTGAGGAGGTATGCTGCGAAGAACTGACACGTTATTTTTTAATG
Ggccttatcagagtttttgacttttctaaaaaagcgatgcattgagggat
tgtttcgagtgtattattGCAAATAATATCTCTTAGGAACACTCCTccag
ggaattctattgtaatacacatcgcttttttagaaaaatttaaaactccC
ACCTATACAGTAAGGTCTATTATTTAAAACGACATAAGAAAGACTTTGTT
GTAGTTTGAGATCAGGCAAACGCAAACATTACCAGATTCCCATCAAGATT
CAATATTAATATTATGTAGCTACGTATAATATAATGCAACACTAGACAGC
ACTAGAAGGGGGacaaattgtgaatgttttggtgGTACATGGTGGGATGT
TTTGTGTGTGACATGTGATGCTTAATTTAATGACATTAAATTTTACATGT
TAAGGCAGCAATCAGAAAatacacttccattttatttttaatctttttaa
gtcatagtagaaaatttcaaattcactgcTGCTGGTGGTCAAACACTTTA
AATGATTTGCAAATAAAATAAGCTCTTTCACagaattttcctcaaaattc
ttGAACATGTCACTGGCAAAATGAAATGCATGGAGAGGTTCGTGATCGCT
GCCTTATAATATTGGAATGTTTCAAGgggtttgaagtcattgcatgattt
gcttttttgattgcatgaatgtatgaaaactagTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATATTGGAATGTTT
CAAGgggtttgaagtcattgcatgatttgcttttttgattgcatgaatgt
atgaaaactagtagtgaattataaattagttataaatttttgtaaaaatg
gattttattaTTTAGTTATGACATCCTAAACTATCAAAAAGTCTATATTA
TAATGtcacatttactgtaatatttcaaaactacagaatcaaaacaatga
cgaGAAAGACTACATTTTATTACTATAAACTACACATCAGGTGTGTTATT
GTTTTAAGGACTTAATGATTGAAATAGGGTCTTTTTTCACAGGATacgtt
tgttgaaaaattctagaaggatcttttaaaaatcatcaaattattttca Coding sequence (CDS) from alignment at sc0004857:1..1799 >TCONS_00044021 ID=TCONS_00044021|Name=TCONS_00044021|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0004857:1..1799 (Clytia hemisphaerica)
CGCTCTGACAGGTATTTTAGGGGGTACTCCATTAGGTACTCCATTGgagt
actccatggagctaatccatgttttacaacgaccctcttttgcttgtaaa
ataacgttgctgctgttcacacttaTTGTAGATTTTACGcgagtatcatt
cttgaggttttttacCACTACCTCTGGAGTCTGGGAGAGGAGAGCTGTCC
TACCATCCACACAGTAATGTGACAATGTGCGtggctgttttcttttgttg
tcaactgaaattttcgataatggtttgacagatggttgtttaccttgtgg
catccatactgcatggcacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044021-exon-sc0004857-1491911889:1..1799 | TCONS_00044021-exon-sc0004857-1491911889:1..1799 | Clytia hemisphaerica | exon |
| TCONS_00044021-exon-sc0004857-1510915933:1..1799 | TCONS_00044021-exon-sc0004857-1510915933:1..1799 | Clytia hemisphaerica | exon |
| TCONS_00044021-exon-sc0004857-1575043694:1..1799 | TCONS_00044021-exon-sc0004857-1575043694:1..1799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004857 | supercontig | sc0004857:1..1799 . |
Blast
The following BLAST results are available for this feature:
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