TCONS_00044026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044026
Unique NameTCONS_00044026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044026 ID=TCONS_00044026|Name=TCONS_00044026|organism=Clytia hemisphaerica|type=transcript|length=157bp
TGTCGATCTTCATGATGAACCTcctcgaccaatcaaaatcaaCAGCAAGA
CACGAAGAAAAAGTTCCAGTAAATCAACGTTTGAAAGAGAGCCATCAACA
TTCGAGgAATTTGTTCAAGATGTTCATGATATTTCTACTGTTACCAAAAT
GTTCATC
Run BLAST on NCBI

transcript from alignment at sc0004862:68..666-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044026 ID=TCONS_00044026|Name=TCONS_00044026|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0004862:68..666- (Clytia hemisphaerica)
TGTCGATCTTCATGATGAACCTCCTCGACCAATCAAAATCAACAGCAAGA
CACGAAGAAAAAGTTCCAGTAAATCAACGTTTGAAAGAGAGCCATCAACA
TTCGAGGTAATTAACTTTAACGATGGTTCCAATACCTCTATTGTCTTACC
TCTCATGATTTTCAACTTAAAATTTTGCCCAAATTTCGTCCACGGTGGGG
AAGATACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCGCCATTTT
CGCGAATTTTGGCCTCGCGAAAGTTTGTACGCCTAAAGTACCCTACAATT
TCAGGAAAATTGACTTTGATTTTATCTCCATGTGAAATTCAATGGAAAAA
GTCGCGCTCACTAGAATTTTTATCCCCATTGGGATTGGATATAAATTTAC
ATTGTTGAATGCGAGGGCTGTGAGACAGGGGTATACAATATACACTGTTT
TTTTTTCAAGTCTAAAAACCTATACCATTTCTATAATGAAAGCTGATGCC
ATGCTTTGGTTTTGTGTCAATAGTTTTTTTGAATTTTTTTACTTTCAGGA
ATTTGTTCAAGATGTTCATGATATTTCTACTGTTACCAAAATGTTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027682XLOC_027682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044026-exon-sc0004862-1575043694:561..666TCONS_00044026-exon-sc0004862-1575043694:561..666Clytia hemisphaericaexon
TCONS_00044026-exon-sc0004862-1575043694:68..118TCONS_00044026-exon-sc0004862-1575043694:68..118Clytia hemisphaericaexon
TCONS_00044026-exon-sc0004862-1510915933:561..666TCONS_00044026-exon-sc0004862-1510915933:561..666Clytia hemisphaericaexon
TCONS_00044026-exon-sc0004862-1510915933:68..118TCONS_00044026-exon-sc0004862-1510915933:68..118Clytia hemisphaericaexon
TCONS_00044026-exon-sc0004862-1491911889:561..666TCONS_00044026-exon-sc0004862-1491911889:561..666Clytia hemisphaericaexon
TCONS_00044026-exon-sc0004862-1491911889:68..118TCONS_00044026-exon-sc0004862-1491911889:68..118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004862supercontigsc0004862:68..666 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top