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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044029 ID=TCONS_00044029|Name=TCONS_00044029|organism=Clytia hemisphaerica|type=transcript|length=1822bp
ACAACATAGCATATTGAGCATAATATATATCACCACGCGCGAATGCGCGC
GTTTGCCTCTCTGAAATCAATACTCGGTCCCAGCTCTCTTTCGGCTTTCA
CTAGCGCGAAAGTCGAATCCGCCATCTTTTTCAACCACATTTTGCAAAGA
AGGCGGTCGCCTTTGTGAAGATACAACAAATACAAGAATTGGAGGAAAGA
TCCTAACCAAGCTTGCAACCATACAACCACAATCAAGTAttaaaaaattc
ttaagattcAAAAAGACCAATCTGGGATTTACAAATCAAGGTAACTgtat
tattttctttgattttctcaacATATAAGTGATtataactttttgtttct
tAGCAAATCGAATTTGAATTATTAAAGTGGAGTTTCAGAATTATGCTTCA
TGATTTAAATGATTTGATGATCACATTGAACTTAATCAAATTCAATCAAT
TTGAATTAAAGATGTGATATAATTGTTCTACAGGGGCATAGGAGGAGTGT
ACcacaaaaaacaaatgaaagcaTACATACTNATGTAATTGTTCTACAGG
GGCATAGGAGGAGTGTACcacaaaaaacaaatgaaagcaTACGTGACAGG
GAGGGGGAGGTCAAGTAGAAATGCACCAAGATGCACGTATATTGTGACAC
TGTGacatttttattagaaataAAAGGTCATCCAAAGTTTAATAAGATGT
TGTGGTTATTTCATTAACAAAGAagttaaacttttttaattttcttctaA
AAACCGCAACTATCTGtgtatccagacggtgtcaatccaACAAATCGAAC
gctgaatcaattgaacgcaaatcgaatattacccaggatttgctcttcga
ttgctttgattacgttcgattgtattcgattacgttcgattgattcaatt
atatattagattttattcgctttggtacGGTACTTCAGCACTAGGCCGCC
CGCTAAAAAGCCCTAACGGattgatccaatttaatttaatcaaactcatc
aaacatgAACCTAACCAAACGAAATAGAAGATTATTCGACAATCGAACAT
AGTtcactatcaatcgaaccaatttaAGCTTACttaaacgcaatcgaaca
caatcgaatattacccaggaatcagccattcgattgatatttgattatac
gttcgattggttccattgcgatttttgttcgaagttgttcgattgtcACC
GTCTGGGTACATACAGGCCATATTTTATAAAGGAAAGGCAGCGTTGTCTG
TTGGTGGTCAAAAAGGgaactttttcaatattttggtaatttcgGGAGGG
ACAATAGACCCTTTAAACCTCAAAGCTTTTGTGAGGGAGGATGATATTAA
AAAGAGGTATGTACCTCTTAGGGAAATGCCAAGGTGTACGAGAGTATGCA
AAACAGATATTCAGCAAAGCTATGAACTTTTTTCATTATCCCAATGTGAA
ATTTTGTCTTGATCACAGATTGgtcttttaatgattttttgtatggagAC
AACCTCTTGAGGGAACTATTAAATTAGTGTGTGGTGATGAGTAAAAGCTT
GTTTACAGGCTATTACTTTTCGTCCACGTAACNGGTGATTAGTAAAAGCT
TGATTACAGGCTATTACTATTTCGTCCACGTAACTATTGGTGGTTGTCTT
CATGCTTTGAATTATTGATAGACCAGTCAGTTTTAACGACAATTTTTTAA
TATGAAACTgacttttggtaaattttgaataaaattgtGGTGTAATTGTT
GCATGTCAAAAATTGTCTTGATGACAGATTGgtcttttaatgattttttg
tatggagACAACCTCTTGAGGG Run BLAST on NCBI transcript from alignment at sc0004865:1..1822 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044029 ID=TCONS_00044029|Name=TCONS_00044029|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at sc0004865:1..1822 (Clytia hemisphaerica)
CCCTCAAGAGGTTGTctccatacaaaaaatcattaaaagacCAATCTGTC
ATCAAGACAATTTTTGACATGCAACAATTACACCacaattttattcaaaa
tttaccaaaagtcAGTTTCATATTAAAAAATTGTCGTTAAAACTGACTGG
TCTATCAATAATTCAAAGCATGAAGACAACCACCAATAGTTACGTGGACG
AAATAGTAATAGCCTGTAATCAAGCTTTTACTAATCACCNGTTACGTGGA
CGAAAAGTAATAGCCTGTAAACAAGCTTTTACTCATCACCACACACTAAT
TTAATAGTTCCCTCAAGAGGTTGTctccatacaaaaaatcattaaaagac
CAATCTGTGATCAAGACAAAATTTCACATTGGGATAATGAAAAAAGTTCA
TAGCTTTGCTGAATATCTGTTTTGCATACTCTCGTACACCTTGGCATTTC
CCTAAGAGGTACATACCTCTTTTTAATATCATCCTCCCTCACAAAAGCTT
TGAGGTTTAAAGGGTCTATTGTCCCTCCcgaaattaccaaaatattgaaa
aagttcCCTTTTTGACCACCAACAGACAACGCTGCCTTTCCTTTATAAAA
TATGGCCTGTATGTACCCAGACGGTgacaatcgaacaacttcgaacaaaa
atcgcaatggaaccaatcgaacgtataatcaaatatcaatcgaatggctg
attcctgggtaatattcgattgtgttcgattgcgtttaaGTAAGCTtaaa
ttggttcgattgatagtgaACTATGTTCGATTGTCGAATAATCTTCTATT
TCGTTTGGTTAGGTTcatgtttgatgagtttgattaaattaaattggatc
aatCCGTTAGGGCTTTTTAGCGGGCGGCCTAGTGCTGAAGTACCgtacca
aagcgaataaaatctaatatataattgaatcaatcgaacgtaatcgaata
caatcgaacgtaatcaaagcaatcgaagagcaaatcctgggtaatattcg
atttgcgttcaattgattcagcGTTCGATTTGTtggattgacaccgtctg
gatacaCAGATAGTTGCGGTTTTtagaagaaaattaaaaaagtttaactT
CTTTGTTAATGAAATAACCACAACATCTTATTAAACTTTGGATGACCTTT
tatttctaataaaaatgtCACAGTGTCACAATATACGTGCATCTTGGTGC
ATTTCTACTTGACCTCCCCCTCCCTGTCACGTAtgctttcatttgttttt
tgtgGTACACTCCTCCTATGCCCCTGTAGAACAATTACATNAGTATGTAt
gctttcatttgttttttgtgGTACACTCCTCCTATGCCCCTGTAGAACAA
TTATATCACATCTTTAATTCAAATTGATTGAATTTGATTAAGTTCAATGT
GATCATCAAATCATTTAAATCATGAAGCATAATTCTGAAACTCCACTTTA
ATAATTCAAATTCGATTTGCTaagaaacaaaaagttataATCACTTATAT
gttgagaaaatcaaagaaaataatacAGTTACCTTGATTTGTAAATCCCA
GATTGGTCTTTTTgaatcttaagaattttttaaTACTTGATTGTGGTTGT
ATGGTTGCAAGCTTGGTTAGGATCTTTCCTCCAATTCTTGTATTTGTTGT
ATCTTCACAAAGGCGACCGCCTTCTTTGCAAAATGTGGTTGAAAAAGATG
GCGGATTCGACTTTCGCGCTAGTGAAAGCCGAAAGAGAGCTGGGACCGAG
TATTGATTTCAGAGAGGCAAACGCGCGCATTCGCGCGTGGTGATATATAT
TATGCTCAATATGCTATGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044029-exon-sc0004865-1491911889:1..1822 | TCONS_00044029-exon-sc0004865-1491911889:1..1822 | Clytia hemisphaerica | exon |
| TCONS_00044029-exon-sc0004865-1510915933:1..1822 | TCONS_00044029-exon-sc0004865-1510915933:1..1822 | Clytia hemisphaerica | exon |
| TCONS_00044029-exon-sc0004865-1575043694:1..1822 | TCONS_00044029-exon-sc0004865-1575043694:1..1822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004865 | supercontig | sc0004865:1..1822 . |
Blast
The following BLAST results are available for this feature:
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