TCONS_00044031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044031
Unique NameTCONS_00044031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044031 ID=TCONS_00044031|Name=TCONS_00044031|organism=Clytia hemisphaerica|type=transcript|length=2514bp
ctataactcgattgTCTCCTAAACTCGAAGAAGTTTTGTGGTCACTTCAG
TTATGCCTcttaaaccttactccataactcgaaatttccttaactcgaac
aagtttatgttccccgtgcgtgctcgaattatggagactgCACTGTATTT
TAACTCTAACCTGACCTGGTTTCTCTCTTCCACAGGGTGAAGATGACGAT
GAAGATGTAAAAGAAACTGAAGAAGATCAGGACGGTTTTTTTGTTCCGCA
TGGTTACCTGTCCGATGACGAGGGTGTTCCAGATGATGAGGAAGATGAAG
AGAatgaagaaaacgaaagtgaaaaattgccggtaccgaaaGATATAGCT
GATGCAAAAAGgGAACAAGATAAACTGAAATCAAAAGTCGATTCATTCGA
AGTCGCTTTCAAAAAGAAGTTGAAACCACGAAAACCGATATGCATTGGAA
TCAAATTCACAAACAATATTGAGGATGCTGATCCCTTATTGAAAGATTTT
TACAAAATTTCCTTATACAAGTCTCACGGTGACTCAGAGGCTAATGAGAA
TGAAGACCAAGATGGTACACCAAAGAAAACTGGTATCGAGGCTAGTGGAG
AAGTTAATAATGGATCATCGGTTCCTTTAACTGTCCCCGAGGAAGccatg
CCGTTCCTTCTGAAATTAGTCCACGGAAATGCAACAAGTATTGGGAAAAT
GATTCAAGAATTCCAAACATATTGGGTCGAATATGTCAAAATAAACGAGC
TCGATAACCTACGCAAAACTATTTCTAAGAAACAATGCATCAAAAAGATG
AAAGAAATTGCTACGAAAGGTCCCAATGAAAAGTTGGGGAAGATTTGTTA
TACAGTTAATGTTGATATTCTTCAGAAATACGGTATAGCAGATTTAGAGC
TCGGTTGTGGGTTGACTTATCCAGTACTCAAAGAAACAATGTTGCTAAGC
AACGGAGCGAAAGAAAATGGCGCGGATACTACGGAAACTGTTGTTAATGG
GGATTGTATTATGTTAGATACTTTAAAAACTGAAGATGGTAATTTACAGA
ACCAGAATGTTGATAAAATACCGAACGATGTGTCGATACCGGCAGAAAAC
AAAATGGAAgtggattgagatttttttggTTTCCTTTCATTGATTGTAAT
CTACACAAAAGTTTGTATTTGCATTTCTCGATTGGTCATTTAGCGAAAGT
TGTTGTTGGTGTATGGAGATCTTGATCTTGCAGGAAAGGTGAAATCGTTT
TCGAAACAAAGTTATTTGAAATAGCAACCCTGGTTACAGACAGGAACCTG
GTGATACAGGTTTCGTATTAGATCTGTTTCAGGTCACCTTGTCATCTACT
CACTACCGGAATATGTGGTTTACTTTTAAACTCTTTTGACCTTTCTAACA
AAGATACTCTTAGAAGGAACAATGGTGTATTGTTCACTCTAGTCGACTGG
acatttgaaaagaattcgttTTTTGTTAAATAGTGGCTTTGTTTGACTTA
CTTCGTGATAAATTAGTATTTTTCTCTGTTGAATACTGAGAAGTGAACAC
TATGGACAAAGGTAATTCTAACTGATATGGATTGAGAATTAGTTTGGAAT
GTTCACTTACTcttgggtgcctaataaacgccTCCGCCCTACGCCAACCC
ACCGNGGAATGTTCACTTACTcttgggtgcctaataaacgccTCCGCCCT
ACGCCAACCCaccgattttttttccaatcccctcccctcatttttgaaat
attttcagctgccaAAAGAAGAGTCCTTTTTTAATTCTCTagttttagcc
tatatttaccttattcttCGGCTCTTCAAGGGTATAATTTCCAACCCCTC
TGCTGCAATAGGTCGCCCCCCCTGCCaattaaaaattgaagatttttcta
ccccctgtttattaggcacctgggATCTTCGgaataaaagaaaacataaa
ttAGTGAGTGTCTTCAAGGTAtgcaccattgtaatgtcttccaCGAACCt
agcagctgattggttgcaagtggacgtattgaatgattttacgtcactta
caaccaatcagcgaTTGGTTCCGTGATGTGATgtcgaagacattgcaatg
gtgcatatcatgaatgcTTTCTTACAAACATAAAAGAGAGatatttcgtt
ttctttctCGATTAGGATCCCACCGTttcattttagaaatatttagaAGT
TATCACATTTGAAAGGCCCTCTTTTTTGCCCTAATTACTCTaatgtaatt
tcaattttttttatttactttaatggggtaaactttcgcggggattaaat
ttcgcggttgagcctaaccacgaaattcaaaaatttcgcggggacttaat
ttggcgtttggcactattgggtggcaatattttcgcaatatttttgattt
ccactgtcaaatcatgcatgttggttgttgaaatacacattatttgcgct
tctttgatgcaattaaccattcaaaaagtatttattataCATATTTTGAG
TATTGTTTAGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00044031-protein

>TCONS_00044031-protein ID=TCONS_00044031-protein|Name=TCONS_00044031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MPFLLKLVHGNATSIGKMIQEFQTYWVEYVKINELDNLRKTISKKQCIKK
MKEIATKGPNEKLGKICYTVNVDILQKYGIADLELGCGLTYPVLKETMLL
SNGAKENGADTTETVVNGDCIMLDTLKTEDGNLQNQNVDKIPNDVSIPAE
NKMEVD
Run BLAST on NCBI

transcript from alignment at sc0004866:1..3353-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044031 ID=TCONS_00044031|Name=TCONS_00044031|organism=Clytia hemisphaerica|type=transcript|length=3353bp|location=Sequence derived from alignment at sc0004866:1..3353- (Clytia hemisphaerica)
CTATAACTCGATTGTCTCCTAAACTCGAAGAAGTTTTGTGGTCACTTCAG
TTATGCCTCTTAAACCTTACTCCATAACTCGAAATTTCCTTAACTCGAAC
AAGTTTATGTTCCCCGTGCGTGCTCGAATTATGGAGACTGCACTGTATTT
TAACTCTAACCTGACCTGGTTTCTCTCTTCCACAGGGTGAAGATGACGAT
GAAGATGTAAAAGAAACTGAAGAAGATCAGGACGGTTTTTTTGTTCCGCA
TGGTTACCTGTCCGATGACGAGGGTGTTCCAGATGATGAGGAAGATGAAG
AGAATGAAGAAAACGAAAGTGAAAAATTGCCGGTACCGAAAGATATAGCT
GATGCAAAAAGGGTGATTATTTTGTTGTTTCTTTTTTTGAGGATGTGTAC
TCATATTCGAGGTTTTCTTGTTTGGTGTGTTGTTTGTAATATCGCTCAAA
AGACAACTAAAGCCTTTTCAAGAAAATAAATTATTTTCATTAAAGTGTCA
AATTTATAGAGGTATACCTAAATTCTTCCTTCACACTTTATTCTCAACTT
TTCCAATCTTGCCTTTGATGTATAGGAACAAGATAAACTGAAATCAAAAG
TCGATTCATTCGAAGTCGCTTTCAAAAAGAAGTTGAAACCACGAAAACCG
ATATGCATTGGAATCAAATTCACAAACAATATTGAGGATGCTGATCCCTT
ATTGAAAGATTTTTACAAAATTTCCTTATACAAGTCTCACGGTGACTCAG
AGGCTAATGAGAATGAAGACCAAGATGGTACACCAAAGAAAACTGGTATC
GAGGCTAGTGGAGAAGTTAATAATGGATCATCGGTTCCTTTAACTGTCCC
CGAGGAAGGTCAGTAAATTTAGTTAATAATAGTTAACAAAACAAGAAAAA
TGCGGTGTCACAACTTTCAATCTTCATTTTTCTGGGAGAATGACGTTGTG
TAAACAAATAATTTTTATTTTTATTCGAGGGAATTCTATTGTAATACTCC
CGAAACAATCTCACAATGCATCGCTTTTTTAGAAAAATCAAAAACTGCGA
TAAAATATATTCTTTGTTTCTTCACATTATGAAATGAAACGTTTCATCTA
CAGAAAAAAAATCTTCTTGTTACAATACACCTTTCCCGAATTGTTATTTA
GGCTTTTTGACTTTTTTGTTTTAATGTTTGAATGTTTCTATTTAGTTTCA
TAAAATTGTATGTCGCAAAACTAAACAAATAAAAAAAGAATTATGAAAAA
AGCACTTCCGGTTCTTGAGTTATTTTGAATTTGAAATTTCTTTATAAACA
ATAGAATTACATGGAAACGAGGCCGGGCTGTATGTTTTAGTTTTTATAAG
GGATTTCACATTGAACAAAAACAGTCATAAAAATTGATAGAAAAAAGCTT
TTGAGCTCAAATTTTCAGCATGCACTTGTCTTTATAGGAGGAATACAAAT
ATATAGTTTTCAATATNNTTTATTTTTTTTTCAGCCATGCCGTTCCTTCT
GAAATTAGTCCACGGAAATGCAACAAGTATTGGGAAAATGATTCAAGAAT
TCCAAACATATTGGGTCGAATATGTCAAAATAAACGAGCTCGATAACCTA
CGCAAAACTATTTCTAAGAAACAATGCATCAAAAAGATGAAAGAAATTGC
TACGAAAGGTCCCAATGAAAAGTTGGGGAAGATTTGTTATACAGTTAATG
TTGATATTCTTCAGAAATACGGTATAGCAGATTTAGAGCTCGGTTGTGGG
TTGACTTATCCAGTACTCAAAGAAACAATGTTGCTAAGCAACGGAGCGAA
AGAAAATGGCGCGGATACTACGGAAACTGTTGTTAATGGGGATTGTATTA
TGTTAGATACTTTAAAAACTGAAGATGGTAATTTACAGAACCAGAATGTT
GATAAAATACCGAACGATGTGTCGATACCGGCAGAAAACAAAATGGAAGT
GGATTGAGATTTTTTTGGTTTCCTTTCATTGATTGTAATCTACACAAAAG
TTTGTATTTGCATTTCTCGATTGGTCATTTAGCGAAAGTTGTTGTTGGTG
TATGGAGATCTTGATCTTGCAGGAAAGGTGAAATCGTTTTCGAAACAAAG
TTATTTGAAATAGCAACCCTGGTTACAGACAGGAACCTGGTGATACAGGT
TTCGTATTAGATCTGTTTCAGGTCACCTTGTCATCTACTCACTACCGGAA
TATGTGGTTTACTTTTAAACTCTTTTGACCTTTCTAACAAAGATACTCTT
AGAAGGAACAATGGTGTATTGTTCACTCTAGTCGACTGGACATTTGAAAA
GAATTCGTTTTTTGTTAAATAGTGGCTTTGTTTGACTTACTTCGTGATAA
ATTAGTATTTTTCTCTGTTGAATACTGAGAAGTGAACACTATGGACAAAG
GTAATTCTAACTGATATGGATTGAGAATTAGTTTGGAATGTTCACTTACT
CTTGGGTGCCTAATAAACGCCTCCGCCCTACGCCAACCCACCGNGGAATG
TTCACTTACTCTTGGGTGCCTAATAAACGCCTCCGCCCTACGCCAACCCA
CCGATTTTTTTTCCAATCCCCTCCCCTCATTTTTGAAATATTTTCAGCTG
CCAAAAGAAGAGTCCTTTTTTAATTCTCTAGTTTTAGCCTATATTTACCT
TATTCTTCGGCTCTTCAAGGGTATAATTTCCAACCCCTCTGCTGCAATAG
GTCGCCCCCCCTGCCAATTAAAAATTGAAGATTTTTCTACCCCCTGTTTA
TTAGGCACCTGGGATCTTCGGAATAAAAGAAAACATAAATTAGTGAGTGT
CTTCAAGGTATGCACCATTGTAATGTCTTCCACGAACCTAGCAGCTGATT
GGTTGCAAGTGGACGTATTGAATGATTTTACGTCACTTACAACCAATCAG
CGATTGGTTCCGTGATGTGATGTCGAAGACATTGCAATGGTGCATATCAT
GAATGCTTTCTTACAAACATAAAAGAGAGATATTTCGTTTTCTTTCTCGA
TTAGGATCCCACCGTTTCATTTTAGAAATATTTAGAAGTTATCACATTTG
AAAGGCCCTCTTTTTTGCCCTAATTACTCTAATGTAATTTCAATTTTTTT
TATTTACTTTAATGGGGTAAACTTTCGCGGGGATTAAATTTCGCGGTTGA
GCCTAACCACGAAATTCAAAAATTTCGCGGGGACTTAATTTGGCGTTTGG
CACTATTGGGTGGCAATATTTTCGCAATATTTTTGATTTCCACTGTCAAA
TCATGCATGTTGGTTGTTGAAATACACATTATTTGCGCTTCTTTGATGCA
ATTAACCATTCAAAAAGTATTTATTATACATATTTTGAGTATTGTTTAGA
AAT

Coding sequence (CDS) from alignment at sc0004866:1..3353-

>TCONS_00044031 ID=TCONS_00044031|Name=TCONS_00044031|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0004866:1..3353- (Clytia hemisphaerica)
ATGCCGTTCCTTCTGAAATTAGTCCACGGAAATGCAACAAGTATTGGGAA
AATGATTCAAGAATTCCAAACATATTGGGTCGAATATGTCAAAATAAACG
AGCTCGATAACCTACGCAAAACTATTTCTAAGAAACAATGCATCAAAAAG
ATGAAAGAAATTGCTACGAAAGGTCCCAATGAAAAGTTGGGGAAGATTTG
TTATACAGTTAATGTTGATATTCTTCAGAAATACGGTATAGCAGATTTAG
AGCTCGGTTGTGGGTTGACTTATCCAGTACTCAAAGAAACAATGTTGCTA
AGCAACGGAGCGAAAGAAAATGGCGCGGATACTACGGAAACTGTTGTTAA
TGGGGATTGTATTATGTTAGATACTTTAAAAACTGAAGATGGTAATTTAC
AGAACCAGAATGTTGATAAAATACCGAACGATGTGTCGATACCGGCAGAA
AACAAAATGGAAGTGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027687XLOC_027687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044031-exon-sc0004866-1575043694:2992..3353TCONS_00044031-exon-sc0004866-1575043694:2992..3353Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1575043694:2496..2778TCONS_00044031-exon-sc0004866-1575043694:2496..2778Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1575043694:1..1869TCONS_00044031-exon-sc0004866-1575043694:1..1869Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1510915933:2992..3353TCONS_00044031-exon-sc0004866-1510915933:2992..3353Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1510915933:2496..2778TCONS_00044031-exon-sc0004866-1510915933:2496..2778Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1510915933:1..1869TCONS_00044031-exon-sc0004866-1510915933:1..1869Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1491911889:2992..3353TCONS_00044031-exon-sc0004866-1491911889:2992..3353Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1491911889:2496..2778TCONS_00044031-exon-sc0004866-1491911889:2496..2778Clytia hemisphaericaexon
TCONS_00044031-exon-sc0004866-1491911889:1..1869TCONS_00044031-exon-sc0004866-1491911889:1..1869Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044031-proteinTCONS_00044031-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004866supercontigsc0004866:1..3353 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.5727	40.9577	38.5501	38.8719	21.3248	17.3071	16.5162	17.6505	12.3056	14.3827	11.1026	7.79549	7.85846	7.58709	8.75386	9.14539	12.9296	11.9395	2.73321	3.38072	10.3752	12.2009	25.3342	22.5429	18.8875	20.2496	4.16065	3.65147	15.0672	17.2195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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