|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044040 ID=TCONS_00044040|Name=TCONS_00044040|organism=Clytia hemisphaerica|type=transcript|length=500bp
tttttcagctttcaaaggAAGATTATGCAGTAGTGTTAGTTGGTGGTGGA
AGCATTTTAATTGATGTCAACAAAACTTTCGCTGGAGCTTCCAAAATCAT
CAAACCGCCCTTCTATCAGGTCGCAAACGCAGTCGGAGCAGCTTTGAGTC
AAGTCAGCGGAACTTTCGACAAATTAATTGAAATGAACGATGATCAAAAC
ACACGGCAGACGATCCTCCAACAAGCAAAAGATTACGCTATAGAGCAGGC
TGTTCAAAATGGCGCCATTCGTAGCACCTGCGCCATCTTGGATATTCAAG
AGATTAACATGACGTACGTAGCTCTACCTCGTAAACGTCTTACTGTGAAA
GCGGTTGGAGATCTACAAGACGTTTCAACGGAAACAAACGTGGAGAGAAC
ACAAAAAGGATCAGGAGACGTTCGTTTTGAAAATAACGATCatgcaaaag
aaaagaaaaaatctaatgagAAGCCAGaaacCGAACTTCAACAAACCACT Run BLAST on NCBI transcript from alignment at sc0004874:3121..4749+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044040 ID=TCONS_00044040|Name=TCONS_00044040|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at sc0004874:3121..4749+ (Clytia hemisphaerica)
tttttcagctttcaaaggAAGATTATGCAGTAGTGTTAGTTGGTGGTGGA
AGCATTTTAATTGATGTCAACAAAACTTTCGCTGGAGCTTCCAAAATCAT
CAAACCGCCCTTCTATCAGGTAATTCCACTCTTCTAACAGCAAAGTACCT
CCaccggtttgcgtgaatgcgtgaatgggctttttcacttgcgtgaatgc
gtgaaaattaaaaaaggttgcgtgaatgcgtgaattggaaagctttgcgt
gaacaaaatttgcctgattgcgtgaattgaaggtccgctgtGTGGCCTCA
TAACACCAATATTATCTAGTACTTTCATTATAGCTTTTCATgtttgttaa
gttacgtaacttccgccattatggaagcaaacgttcgatttgcgtaagag
ATCGCCTTCTatagattcgaatgttttcttcgACAATGGTGGTAATTACG
TAACTTACCTAACCTATAGAACATACCCTTATCAAGTTTTGAACGAGAAT
ATATGATTTTTTGAGAGTCTGTTCTACTCAAGGTATACCAGGTTTtatca
ttttccaaatttcagtTTAGATTCAGTTTATCTATTTTCCTACTTAAAGG
TCGCAAACGCAGTCGGAGCAGCTTTGAGTCAAGTCAGCGGAACTTTCGAC
AAATTAATTGAAATGAACGATGATCAAAACACACGGCAGACGATCCTCCA
ACAAGCAAAAGATTACGCTATAGAGCAGGCTGTTCAAAATGGCGCCATTC
GTAGCACCTGCGCCATCTTGGATATTCAAGAGATTAACATGACGTACGTA
GCTCTACCTCGTAAACGTCTTACTGTGAAAGCGGTTGGAGATCTACAAGA
CGTTTCAACGGAAACAAACGTGGAGAGAACACAAAAAGGATCAGGAGACG
TTCGTTTTGAAAATAACGATCatgcaaaagaaaagaaaaaatctaatgag
AAGCCAGGTAAagctaacctgagatcagattgtgatcgTTTTcggcccac
cacgctgaagctctaaagggattggtgaaaacataacaatctgccGAATA
TGCTttctcaaaatcgtaaggaccgcactcgtctaaaaggactgggaatg
acttTCCggtgcacaacaagattcttgttgtagaattttccgcgggaggg
cTATATTAAAGGACCTTCAGAGGTTTTTACCGTGTGCGTAAGAAAATTAC
AACCACATTACAATATCATTCCTCTCGGATGGCAAATTGACCCGCACCTA
TAGAGCTTTAGCATGGGAGGCCGCCATTTAATTGACAGACTTTTGCTCTA
ATTCAACATGACATCATGATAAGGAAAAGTTCTTTTTAACACCTGTTGAG
TCAGACAATTTTCAATGACAAGACGACTTCTTATCGGTGCGCTGTACAAA
AATATCGGATTCATTTTTGACATACTTTACaaaaatcctcatatcttctA
AACTAGATTAGCTATATTGATGAAGCTTTCAGGGAATGTTTGAAATAGGA
TATCGGTGGCATCTGTTTGAATGGTATAGCACAAGTAGCAAAGGCTACGT
CaaaatttcaattgtttttttttttggcacaTCCGgtatttctcttcttt
tttcagaaacCGAACTTCAACAAACCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044040-exon-sc0004874-1491911889:3121..3239 | TCONS_00044040-exon-sc0004874-1491911889:3121..3239 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1510915933:3121..3239 | TCONS_00044040-exon-sc0004874-1510915933:3121..3239 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1575043694:3121..3239 | TCONS_00044040-exon-sc0004874-1575043694:3121..3239 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1491911889:3720..4077 | TCONS_00044040-exon-sc0004874-1491911889:3720..4077 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1510915933:3720..4077 | TCONS_00044040-exon-sc0004874-1510915933:3720..4077 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1575043694:3720..4077 | TCONS_00044040-exon-sc0004874-1575043694:3720..4077 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1491911889:4727..4749 | TCONS_00044040-exon-sc0004874-1491911889:4727..4749 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1510915933:4727..4749 | TCONS_00044040-exon-sc0004874-1510915933:4727..4749 | Clytia hemisphaerica | exon |
| TCONS_00044040-exon-sc0004874-1575043694:4727..4749 | TCONS_00044040-exon-sc0004874-1575043694:4727..4749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004874 | supercontig | sc0004874:3121..4749 + |
Blast
The following BLAST results are available for this feature:
|
