TCONS_00044043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044043
Unique NameTCONS_00044043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044043 ID=TCONS_00044043|Name=TCONS_00044043|organism=Clytia hemisphaerica|type=transcript|length=583bp
CAGAAGTGCATATGAGTAATCATAATATAAACTCAtcgtaaaaaaaacat
taacaGATAATGGCTGCAAATCCGATATCGGCAGACACTCCTCAAGTTCA
ACAAGCCAAGAAAGAAATTCTTCTCATATTTGATTTTGATAACACAATCA
TTGACAAAAATACAGACTCAGAAATTATTAAAGCACAAAATTTATATGGA
AAATGTTTGTCAGGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGA
AACAATGTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAA
AGGACATTGATAAAATTATCGAAGATATACCATTGACTCctggttttgaa
aaagtttttgaatttttacgtCAGAATCAAGAGAAATGTGAATGCATAAT
GCTCTCGCATTCGAACAGTTATTTCATAGATTTATTGGTGAAGAAATATT
CAATCGgtgattgttttgattctaTACACACTTACGAAGCAGAATGGATG
AAGGATGGACCTCTTCTGGTCAAACCTTATCACCCATTCCTTGTCAATTG
TCAAATCTGTCCACCAGATTTCTGTAAAGATAT
Run BLAST on NCBI

protein sequence of TCONS_00044043-protein

>TCONS_00044043-protein ID=TCONS_00044043-protein|Name=TCONS_00044043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MAANPISADTPQVQQAKKEILLIFDFDNTIIDKNTDSEIIKAQNLYGKCL
SGKRYLKNDLGWAETMSLALADLHQNNISQKDIDKIIEDIPLTPGFEKVF
EFLRQNQEKCECIMLSHSNSYFIDLLVKKYSIGDCFDSIHTYEAEWMKDG
PLLVKPYHPFLVNCQICPPDFCKD
Run BLAST on NCBI

transcript from alignment at sc0004878:236..2379-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044043 ID=TCONS_00044043|Name=TCONS_00044043|organism=Clytia hemisphaerica|type=transcript|length=2144bp|location=Sequence derived from alignment at sc0004878:236..2379- (Clytia hemisphaerica)
CAGAAGTGCATATGAGTAATCATAATATAAACTCATCGTAAAAAAAACAT
TAACAGATAATGGCTGCAAATCCGATATCGGCAGACACTCCTCAAGTTCA
ACAAGCCAAGAAAGAAATTCTTCTCATATTTGATTTTGATAACACAATCA
TTGACAAAAATACAGACTCAGAAATTATTAAAGCACAAAATTTATATGGA
AAATGTTTGTCAGGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGA
AACAATGTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAA
AGGACATTGATAAAATTATCGAAGATATACCATTGACTCCTGGTTTTGAA
AAAGTTTTTGAATTTTTACGTCAGAATCAAGAGAAATGTGAATGCATAAT
GCTCTCGCATTCGAACAGGTGAGTCATCTTGTTGTAAATTCACTTTGCAG
GATTATTCCGTCTATTAATTTTGAACTTAAAACTTTAGTTTGCAATAAAG
CGAAAGTTAATGAAACCTCTTAAATGCCAATTTTAATGGTTTGGTTCCAG
GATAGAAAACATATTCAAAAATGAAAGGAACTGTAAATCATGATTGAAGC
CAATCCCTCAATAAATATGTTGAGACACTGCTACCCATAGCTGACACACA
ACGTTGTTTCGACGTTCATCTAACGTTATATGGACGTTGTGAACGTTAAA
TAAACGTTGAAACAACGTTGTGTGTCAGTTCAGTAGCCAATTCATTACGA
ACAAGTCGCCATTTGCAATGTTGCGGTGCCTTTTGGCGGCCAAAGAGTCT
TAATGACAATAGGGTAAAGTCTCGTGCATTCATTGGGAGATTGGAGCTTT
TGTCGATTTTGATTTCTCTTGGCTAAATAACATATAAGAAAAGATAAAAT
CTTTGCTCAAACATTGTGTTCCCACTTTTCCATTTCAGTTATTTCATAGA
TTTATTGGTGAAGAAATATTCAATCGGTGATTGTTTTGATTCTATACACA
CTTACGAAGCAGAATGGATGAAGGATGGACCTCTTCTGGTCAAACCTTAT
CACCCATTCCTTGTCAATTGTCAAATCTGTCCACCAGATTTCTGTAAAGG
TACAAAAATGTTGTTATTCCTAAATTTTTTAACAGTCTATTCTTAAAAGA
CCTTTTAATAAATTGAGTTATGAACAACGCTCACCTCGTTTTCAAAATAT
TACTATGCTAATCGACTCCTAGGGGTAATTCATAAAACGTTTACTCATGA
ACATAATAAACGACTGGACATCCATCTCCTTTGTCTTTTTGAAGATAACA
CGGCTAGCTTCGTTGCCGCCTCGTTAAAGGCATAAAATGAAACAATAGAT
TTTGATGACCACTTGGGAATACCTTGTTAACAACGTCAAAACTTCGACAA
AAGTCTCTGTTGTTCTACTCCTCTCAAGTCTTTTATCTATATCATAACAA
AGATAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTGTCT
AATAATTTTAGAGAGTGTCACATTCTAATTTCGATATTCTTATTACACAG
GCTCTCAACTTTGGCAAGCTATTTTTTTCAAGTCATAAAAGAATGATTGG
AGTGACAAAAGGGATTCAAAATTATACACGCAGTTGAAATTCTGCGTTTC
AGAGTTGAAAAAGTTGATTAAATAAATTACAAACTTGTAAAAAAATTCGA
AAATAATTTTTTTGTGCATTAGGAGTAATGTTCAAGCCCTATCAATCTTT
TCNNTATTGTCGGATTTTTCATACCAATTTTGAAAAACAGGCGGCAACGA
AGCTCGCTTCAAAGAGACAATAAAAGATAGATGTCCAGTCGTTTATATGT
TCATGGTTTATTCTATCTATAATATTAACATTTACAGACTTGAGGACTAT
TATGACCTTGTTAAGTGTTCCAAAACGAGGTAGTCGCTGCACCCAATTAA
TTTATAAAAAGGCTATCGTGAACTCTTTTTTCTTGTTGAGATAT

Coding sequence (CDS) from alignment at sc0004878:236..2379-

>TCONS_00044043 ID=TCONS_00044043|Name=TCONS_00044043|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0004878:236..2379- (Clytia hemisphaerica)
ATTTATTTCATAGATTTATTGGTGAAGAAATATTCAATCGGTGATTGTTT
TGATTCTATACACACTTACGAAGCAGAATGGATGAAGGATGGACCTCTTC
TGGTCAAACCTTATCACCCATTCCTTGTCAATTGTCAAATCTGTCCACCA
GATTTCTGTAAAGATGGCTGCAAATCCGATATCGGCAGACACTCCTCAAG
TTCAACAAGCCAAGAAAGAAATTCTTCTCATATTTGATTTTGATAACACA
ATCATTGACAAAAATACAGACTCAGAAATTATTAAAGCACAAAATTTATA
TGGAAAATGTTTGTCAGGGAAGAGGTATTTAAAAAACGACCTTGGTTGGG
CTGAAACAATGTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCT
CAAAAGGACATTGATAAAATTATCGAAGATATACCATTGACTCCTGGTTT
TGAAAAAGTTTTTGAATTTTTACGTCAGAATCAAGAGAAATGTGAATGCA
TAATGCTCTCGCATTCGAACAGATTTATTTCATAGATTTATTGGTGAAGA
AATATTCAATCGGTGATTGTTTTGATTCTATACACACTTACGAAGCAGAA
TGGATGAAGGATGGACCTCTTCTGGTCAAACCTTATCACCCATTCCTTGT
CAATTGTCAAATCTGTCCACCAGATTTCTGTAAAGATGGCTGCAAATCCG
ATATCGGCAGACACTCCTCAAGTTCAACAAGCCAAGAAAGAAATTCTTCT
CATATTTGATTTTGATAACACAATCATTGACAAAAATACAGACTCAGAAA
TTATTAAAGCACAAAATTTATATGGAAAATGTTTGTCAGGGAAGAGGTAT
TTAAAAAACGACCTTGGTTGGGCTGAAACAATGTCCCTGGCGCTGGCTGA
TCTTCACCAAAATAACATCTCTCAAAAGGACATTGATAAAATTATCGAAG
ATATACCATTGACTCCTGGTTTTGAAAAAGTTTTTGAATTTTTACGTCAG
AATCAAGAGAAATGTGAATGCATAATGCTCTCGCATTCGAACAGATTTAT
TTCATAGATTTATTGGTGAAGAAATATTCAATCGGTGATTGTTTTGATTC
TATACACACTTACGAAGCAGAATGGATGAAGGATGGACCTCTTCTGGTCA
AACCTTATCACCCATTCCTTGTCAATTGTCAAATCTGTCCACCAGATTTC
TGTAAAGATGGCTGCAAATCCGATATCGGCAGACACTCCTCAAGTTCAAC
AAGCCAAGAAAGAAATTCTTCTCATATTTGATTTTGATAACACAATCATT
GACAAAAATACAGACTCAGAAATTATTAAAGCACAAAATTTATATGGAAA
ATGTTTGTCAGGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGAAA
CAATGTCCCTGGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAAAG
GACATTGATAAAATTATCGAAGATATACCATTGACTCCTGGTTTTGAAAA
AGTTTTTGAATTTTTACGTCAGAATCAAGAGAAATGTGAATGCATAATGC
TCTCGCATTCGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027697XLOC_027697Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044043-proteinTCONS_00044043-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044043-exon-sc0004878-1575043694:1962..2379TCONS_00044043-exon-sc0004878-1575043694:1962..2379Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1575043694:1281..1441TCONS_00044043-exon-sc0004878-1575043694:1281..1441Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1575043694:236..239TCONS_00044043-exon-sc0004878-1575043694:236..239Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1510915933:1962..2379TCONS_00044043-exon-sc0004878-1510915933:1962..2379Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1510915933:1281..1441TCONS_00044043-exon-sc0004878-1510915933:1281..1441Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1510915933:236..239TCONS_00044043-exon-sc0004878-1510915933:236..239Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1491911889:1962..2379TCONS_00044043-exon-sc0004878-1491911889:1962..2379Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1491911889:1281..1441TCONS_00044043-exon-sc0004878-1491911889:1281..1441Clytia hemisphaericaexon
TCONS_00044043-exon-sc0004878-1491911889:236..239TCONS_00044043-exon-sc0004878-1491911889:236..239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004878supercontigsc0004878:236..2379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.94452	5.47479	2.23488	0.413992	2.07124	0	10.7997	10.5494	20.3036	6.74006	43.7491	12.0307	6.25454	8.51845	17.0276	51.358	4.3699	7.09655	19.6008	17.5232	4.73756	2.78886	4.58685	4.49274	7.18768	11.2261	1.60642	1.65333	5.33132	5.18407
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016965Pase_PHOSPHO-typ
IPR006384PyrdxlP_Pase-rel
IPR023214HAD-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016791phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016791 phosphatase activity
Blast
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BLAST of TCONS_00044043 vs. Swiss-Prot (Human)
Match: PHOP2 (Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo sapiens GN=PHOSPHO2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-26
Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = 3 
Query:  114 EILLIFDFDNTIIDKNTDSEIIK-AQNLYGKCLSGKRYLKNDLGWAETMSLALADLHQNNISQKDIDKIIEDIPLTPGFEKVFEFLRQNQEKCECIMLSHSNSYFIDLLVKKYSIGDCFDSIHTYEAEWMKDGPLLVKPYHPFLVNCQICPPDFCK 578
            +ILL+FDFDNTIID N+D+ I++ A N          Y K    W E M      L    + + ++ + +  +P TPG  ++F F+R+N++K +CI++S SNS FID +++  S  D FD + T  A +  +G L V+ YH    +C  CP + CK
Sbjct:    2 KILLVFDFDNTIIDDNSDTWIVQCAPNKKLPIELRDSYRKG--FWTEFMGRVFKYLGDKGVREHEMKRAVTSLPFTPGMVELFNFIRKNKDKFDCIIISDSNSVFIDWVLEAASFHDIFDKVFTNPAAFNSNGHLTVENYHTH--SCNRCPKNLCK 153
The following BLAST results are available for this feature:
BLAST of TCONS_00044043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHOP23.912e-2636.54Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo s... [more]
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