TCONS_00044047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044047
Unique NameTCONS_00044047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044047 ID=TCONS_00044047|Name=TCONS_00044047|organism=Clytia hemisphaerica|type=transcript|length=719bp
CTCAGCACTAAGTGGAAGCGAAGCAGTAAAAGCATTTAATTCAAGTCCAA
TTATATGCAAACTTGCCGACCTTGGAGAGGCAAGATCAGTGTGTGCCCAA
ACGGAAATGAGTCACTTGGCcaccaaaacaaaatttgtaaacCGTGGCAC
GACGTTTTTCCAAGCACCGGAGCTGCATGTCGAAGAATTCTTGATCACTG
AAGCAACACTAGACGATTTGAAGAAGGCCGACATGTGGGCACTTATCATG
ACATTGTTCACTGTTATCAATCCTGATCAGAGGTATCCTTTTCAGAGAGA
TGTCAAGGAAGTTACAAAGAATGTTCCAAAGGGGAAATACCTAACCACCA
GGCCCGAGAAGATTGTAGAAggacttttgataaaaagatCGATCCCGACC
TCTTCTCCAGAATATGAGATTGAACAGACTTGCTACCACGAGCAGTTGAG
AAGTATAATTCTGCATGGAATAAAGTATGATCCGGATGAGAGAATGACCG
CAGCGGCATTACAGAAGATGCTGGAAGATAATTCGTTagataaaatcaat
tttcaccAACTTGAAGTTTCACAAGCGAGTGTCCTTGAACAGAATGACAT
GATTGTAGCACATATGCTAGCCCAATCTCTCCAAGCAAATCCATCCATAC
AAAATGAAAAGCTTTTCAACAACGCGCAAGTTAGTTATGAAAACGATGGA
ACGAATTCCTGTACATTCC
Run BLAST on NCBI

protein sequence of TCONS_00044047-protein

>TCONS_00044047-protein ID=TCONS_00044047-protein|Name=TCONS_00044047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
SALSGSEAVKAFNSSPIICKLADLGEARSVCAQTEMSHLATKTKFVNRGT
TFFQAPELHVEEFLITEATLDDLKKADMWALIMTLFTVINPDQRYPFQRD
VKEVTKNVPKGKYLTTRPEKIVEGLLIKRSIPTSSPEYEIEQTCYHEQLR
SIILHGIKYDPDERMTAAALQKMLEDNSLDKINFHQLEVSQASVLEQNDM
IVAHMLAQSLQANPSIQNEKLFNNAQVSYENDGTNSCTF
Run BLAST on NCBI

transcript from alignment at sc0004882:3591..4309

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044047 ID=TCONS_00044047|Name=TCONS_00044047|organism=Clytia hemisphaerica|type=transcript|length=719bp|location=Sequence derived from alignment at sc0004882:3591..4309 (Clytia hemisphaerica)
GGAATGTACAGGAATTCGTTCCATCGTTTTCATAACTAACTTGCGCGTTG
TTGAAAAGCTTTTCATTTTGTATGGATGGATTTGCTTGGAGAGATTGGGC
TAGCATATGTGCTACAATCATGTCATTCTGTTCAAGGACACTCGCTTGTG
AAACTTCAAGTTggtgaaaattgattttatctAACGAATTATCTTCCAGC
ATCTTCTGTAATGCCGCTGCGGTCATTCTCTCATCCGGATCATACTTTAT
TCCATGCAGAATTATACTTCTCAACTGCTCGTGGTAGCAAGTCTGTTCAA
TCTCATATTCTGGAGAAGAGGTCGGGATCGatctttttatcaaaagtccT
TCTACAATCTTCTCGGGCCTGGTGGTTAGGTATTTCCCCTTTGGAACATT
CTTTGTAACTTCCTTGACATCTCTCTGAAAAGGATACCTCTGATCAGGAT
TGATAACAGTGAACAATGTCATGATAAGTGCCCACATGTCGGCCTTCTTC
AAATCGTCTAGTGTTGCTTCAGTGATCAAGAATTCTTCGACATGCAGCTC
CGGTGCTTGGAAAAACGTCGTGCCACGgtttacaaattttgttttggtgG
CCAAGTGACTCATTTCCGTTTGGGCACACACTGATCTTGCCTCTCCAAGG
TCGGCAAGTTTGCATATAATTGGACTTGAATTAAATGCTTTTACTGCTTC
GCTTCCACTTAGTGCTGAG

Coding sequence (CDS) from alignment at sc0004882:3591..4309

>TCONS_00044047 ID=TCONS_00044047|Name=TCONS_00044047|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0004882:3591..4309 (Clytia hemisphaerica)
GAATGTACAGGAATTCGTTCCATCGTTTTCATAACTAACTTGCGCGTTGT
TGAAAAGCTTTTCATTTTGTATGGATGGATTTGCTTGGAGAGATTGGGCT
AGCATATGTGCTACAATCATGTCATTCTGTTCAAGGACACTCGCTTGTGA
AACTTCAAGTTggtgaaaattgattttatctAACGAATTATCTTCCAGCA
TCTTCTGTAATGCCGCTGCGGTCATTCTCTCATCCGGATCATACTTTATT
CCATGCAGAATTATACTTCTCAACTGCTCGTGGTAGCAAGTCTGTTCAAT
CTCATATTCTGGAGAAGAGGTCGGGATCGatctttttatcaaaagtccTT
CTACAATCTTCTCGGGCCTGGTGGTTAGGTATTTCCCCTTTGGAACATTC
TTTGTAACTTCCTTGACATCTCTCTGAAAAGGATACCTCTGATCAGGATT
GATAACAGTGAACAATGTCATGATAAGTGCCCACATGTCGGCCTTCTTCA
AATCGTCTAGTGTTGCTTCAGTGATCAAGAATTCTTCGACATGCAGCTCC
GGTGCTTGGAAAAACGTCGTGCCACGgtttacaaattttgttttggtgGC
CAAGTGACTCATTTCCGTTTGGGCACACACTGATCTTGCCTCTCCAAGGT
CGGCAAGTTTGCATATAATTGGACTTGAATTAAATGCTTTTACTGCTTCG
CTTCCACTTAGTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027700XLOC_027700Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044047-proteinTCONS_00044047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044047-exon-sc0004882-1491911889:3591..4309TCONS_00044047-exon-sc0004882-1491911889:3591..4309Clytia hemisphaericaexon
TCONS_00044047-exon-sc0004882-1510915933:3591..4309TCONS_00044047-exon-sc0004882-1510915933:3591..4309Clytia hemisphaericaexon
TCONS_00044047-exon-sc0004882-1575043694:3591..4309TCONS_00044047-exon-sc0004882-1575043694:3591..4309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004882supercontigsc0004882:3591..4309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0725143	0.522816	0.333286	0.572318	0.407195	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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