|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044050 ID=TCONS_00044050|Name=TCONS_00044050|organism=Clytia hemisphaerica|type=transcript|length=1451bp
GAAGAATCATTTGCAAAGCGTGATACCCCATGACCATATGGAAGAAACCA
AACAAAAATCGGAAATAACATCACTTGGTATACTGaacaaaaacgaaaat
aaaaccGAAGATATAATTGAAATCATGAAAGACCTGCACACGATGGTTCC
CTGTCTCGAAGATGGAGAGTTGGTCAAAACGTTTTCAGTTGGAGATTTGC
TGACTGTGGAAAGAGAGACTAATGGCCAAGAGAATTTGAGATGTTCGACC
ACCGTAGCCAAAAGATTGGAGGGTTTAATTCCAGCCTTAGCGGATTTTCA
TACttatggaaattttatggaGGTTGTATGGCACTTCCTGTATGACGCAT
CATCCTCCAGCGACGTTGAAACGCTCGAAATGTGACGAAAGAGCCCATGC
AGTGTGTTAATGCTTGTGAAGAGTTACTTAGCAAGTATACCGAAGCCATG
CTGCTAACGGCTTTTCATCAGTTTATTCAAAGCAAAGAAATCGACTTATC
GAccttgaaagaaccaactgacCAAAACAAGGAAATACTGGGAACTTTGA
TCAAGCAGTTCGTTCAAAGTTATGTCATTGCTGAAACGCCAGATATAGCT
GCCAGTGCCATAATCTATGATTGTAAATTTTGCAACAAATCATACAAACG
AAAGTCCAGTTTGATTGCCCACCTTAAAAAGGAGCACAAAGGTGAAACAA
AAGATGAAAGTGCAGATCCCGGAGAAGACCATGTTGTAAATTACAGCAAG
AATGCTTTGATGCTGGGCTatttggtcaaaaattttgcagatgCTCGAAG
ATACGGTGATGGTGAGCGAATCCTAAGGTTGTACAAGTTTTTCGTGGTTT
TATTCAAAATTGACCACAGGTCCAAATATGGATTTTATTCATTGCAGCTA
CTTGCTCAAATAAACAACCTTTTACCACCTGATCTTGCTTTTGAGTTGAA
GTGGAACAGGACAGTTAACAATACTGGCAGATACGATGGCAATGTCGAGC
TCGATCGTGAGCTCGAACATCGTAATAAATACGCAAAAGAGGAGCTCAAA
CATTTTCAAGGAAAGCTAACCGACCAGTCTATAGAAAGAGTTAGCAGATC
TTATGATAAAATGAGAGAGATTGTTGGAAAATTCGATACGGAAGCCAATG
TTTCAAATCCATCTGGGAAACACACAACTCCTGATTGGAAAGCTGATGTT
CTGGAGCTTGCAGAACAATTCCAAAGTTCAAACCTTTTTCAAAGTGATCC
AAATGGAAGAGCTCACAAAAGGTTCCCTGCTTTTCCCAAGAACGTTTTCA
ATGGCATTGATGCAACATCTTGCAAAAATTGGGCATTAGACACAGTAATG
AATGAATTTAACAACCTTAATATTTACAAACatccattttttaaagttta
gatttattcaaagttttttttcttctagttTCTATTAAGAAAGGGCCCAA
A Run BLAST on NCBI protein sequence of TCONS_00044050-protein >TCONS_00044050-protein ID=TCONS_00044050-protein|Name=TCONS_00044050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MQCVNACEELLSKYTEAMLLTAFHQFIQSKEIDLSTLKEPTDQNKEILGT
LIKQFVQSYVIAETPDIAASAIIYDCKFCNKSYKRKSSLIAHLKKEHKGE
TKDESADPGEDHVVNYSKNALMLGYLVKNFADARRYGDGERILRLYKFFV
VLFKIDHRSKYGFYSLQLLAQINNLLPPDLAFELKWNRTVNNTGRYDGNV
ELDRELEHRNKYAKEELKHFQGKLTDQSIERVSRSYDKMREIVGKFDTEA
NVSNPSGKHTTPDWKADVLELAEQFQSSNLFQSDPNGRAHKRFPAFPKNV
FNGIDATSCKNWALDTVMNEFNNLNIYKHPFFKV Run BLAST on NCBI transcript from alignment at sc0004889:8..1959+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044050 ID=TCONS_00044050|Name=TCONS_00044050|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0004889:8..1959+ (Clytia hemisphaerica)
GAAGAATCATTTGCAAAGCGTGATACCCCATGACCATATGGAAGAAACCA
AACAAAAATCGGAAATAGTAAGAAATGTTTCTATTTTGGGAAGCTTTTGG
CATTTTGTTTTAGATTCACGCTTTGTAATGGAAGCCAGGTTTATAAAGAC
AAATTCCCTGTTTAATATCTGTTTTGAGGCCTTTTCCAGGGGAGGGATAG
TTAAGTAGGAAAAATAGGTGTTgtgtatgtgcgagccataatggtccctt
tttcacaccctttATCAGTATTGGGTAAATTGAAATGATGACTATAACTT
TCTCCCTTTTTTAAGACATCACTTGGTATACTGaacaaaaacgaaaataa
aaccGAAGATATAATTGAAATCATGAAAGACCTGCACACGATGGTTCCCT
GTCTCGAAGATGGAGAGTTGGTCAAAACGTTTTCAGTTGGAGATTTGCTG
ACTGTGGAAAGAGAGACTAATGGCCAAGAGAATTTGAGATGTTCGACCAC
CGTAGCCAAAAGATTGGAGGGTTTAATTCCAGCCTTAGCGGATTTTCATA
CttatggaaattttatggaGGTATTTCTCAATTTATGTTGAAAGATATTA
TGAAATTCAATAATataaagttgtttttttaatcGAGTATTTCTGTGGAG
TGAGTAAGAAAGGGGTCAAATTTATTCGGTGCAATTTTGAAAAGCTGGGC
CTTTAGAAATGTGTTCTTTGtagtaaagattttttctttgtgatattatt
tttaaaatctttagacGGAATGTTCCAACTTTTTGCAAGATATTCTATTA
TTCATTTGTAACTTTATTTTAAGGTTGTATGGCACTTCCTGTATGACGCA
TCATCCTCCAGCGACGTTGAAACGCTCGAAATGTGACGAAAGAGCCCATG
CAGTGTGTTAATGCTTGTGAAGAGTTACTTAGCAAGTATACCGAAGCCAT
GCTGCTAACGGCTTTTCATCAGTTTATTCAAAGCAAAGAAATCGACTTAT
CGAccttgaaagaaccaactgacCAAAACAAGGAAATACTGGGAACTTTG
ATCAAGCAGTTCGTTCAAAGTTATGTCATTGCTGAAACGCCAGATATAGC
TGCCAGTGCCATAATCTATGATTGTAAATTTTGCAACAAATCATACAAAC
GAAAGTCCAGTTTGATTGCCCACCTTAAAAAGGAGCACAAAGGTGAAACA
AAAGATGAAAGTGCAGATCCCGGAGAAGACCATGTTGTAAATTACAGCAA
GAATGCTTTGATGCTGGGCTatttggtcaaaaattttgcagatgCTCGAA
GATACGGTGATGGTGAGCGAATCCTAAGGTTGTACAAGTTTTTCGTGGTT
TTATTCAAAATTGACCACAGGTCCAAATATGGATTTTATTCATTGCAGCT
ACTTGCTCAAATAAACAACCTTTTACCACCTGATCTTGCTTTTGAGTTGA
AGTGGAACAGGACAGTTAACAATACTGGCAGATACGATGGCAATGTCGAG
CTCGATCGTGAGCTCGAACATCGTAATAAATACGCAAAAGAGGAGCTCAA
ACATTTTCAAGGAAAGCTAACCGACCAGTCTATAGAAAGAGTTAGCAGAT
CTTATGATAAAATGAGAGAGATTGTTGGAAAATTCGATACGGAAGCCAAT
GTTTCAAATCCATCTGGGAAACACACAACTCCTGATTGGAAAGCTGATGT
TCTGGAGCTTGCAGAACAATTCCAAAGTTCAAACCTTTTTCAAAGTGATC
CAAATGGAAGAGCTCACAAAAGGTTCCCTGCTTTTCCCAAGAACGTTTTC
AATGGCATTGATGCAACATCTTGCAAAAATTGGGCATTAGACACAGTAAT
GAATGAATTTAACAACCTTAATATTTACAAACatccattttttaaagttt
agatttattcaaagttttttttcttctagttTCTATTAAGAAAGGGCCCA
AA Coding sequence (CDS) from alignment at sc0004889:8..1959+ >TCONS_00044050 ID=TCONS_00044050|Name=TCONS_00044050|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0004889:8..1959+ (Clytia hemisphaerica)
ATGCAGTGTGTTAATGCTTGTGAAGAGTTACTTAGCAAGTATACCGAAGC
CATGCTGCTAACGGCTTTTCATCAGTTTATTCAAAGCAAAGAAATCGACT
TATCGAccttgaaagaaccaactgacCAAAACAAGGAAATACTGGGAACT
TTGATCAAGCAGTTCGTTCAAAGTTATGTCATTGCTGAAACGCCAGATAT
AGCTGCCAGTGCCATAATCTATGATTGTAAATTTTGCAACAAATCATACA
AACGAAAGTCCAGTTTGATTGCCCACCTTAAAAAGGAGCACAAAGGTGAA
ACAAAAGATGAAAGTGCAGATCCCGGAGAAGACCATGTTGTAAATTACAG
CAAGAATGCTTTGATGCTGGGCTatttggtcaaaaattttgcagatgCTC
GAAGATACGGTGATGGTGAGCGAATCCTAAGGTTGTACAAGTTTTTCGTG
GTTTTATTCAAAATTGACCACAGGTCCAAATATGGATTTTATTCATTGCA
GCTACTTGCTCAAATAAACAACCTTTTACCACCTGATCTTGCTTTTGAGT
TGAAGTGGAACAGGACAGTTAACAATACTGGCAGATACGATGGCAATGTC
GAGCTCGATCGTGAGCTCGAACATCGTAATAAATACGCAAAAGAGGAGCT
CAAACATTTTCAAGGAAAGCTAACCGACCAGTCTATAGAAAGAGTTAGCA
GATCTTATGATAAAATGAGAGAGATTGTTGGAAAATTCGATACGGAAGCC
AATGTTTCAAATCCATCTGGGAAACACACAACTCCTGATTGGAAAGCTGA
TGTTCTGGAGCTTGCAGAACAATTCCAAAGTTCAAACCTTTTTCAAAGTG
ATCCAAATGGAAGAGCTCACAAAAGGTTCCCTGCTTTTCCCAAGAACGTT
TTCAATGGCATTGATGCAACATCTTGCAAAAATTGGGCATTAGACACAGT
AATGAATGAATTTAACAACCTTAATATTTACAAACatccattttttaaag
tttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044050-exon-sc0004889-1491911889:8..74 | TCONS_00044050-exon-sc0004889-1491911889:8..74 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1510915933:8..74 | TCONS_00044050-exon-sc0004889-1510915933:8..74 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1575043694:8..74 | TCONS_00044050-exon-sc0004889-1575043694:8..74 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1491911889:323..577 | TCONS_00044050-exon-sc0004889-1491911889:323..577 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1510915933:323..577 | TCONS_00044050-exon-sc0004889-1510915933:323..577 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1575043694:323..577 | TCONS_00044050-exon-sc0004889-1575043694:323..577 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1491911889:831..1959 | TCONS_00044050-exon-sc0004889-1491911889:831..1959 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1510915933:831..1959 | TCONS_00044050-exon-sc0004889-1510915933:831..1959 | Clytia hemisphaerica | exon |
| TCONS_00044050-exon-sc0004889-1575043694:831..1959 | TCONS_00044050-exon-sc0004889-1575043694:831..1959 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004889 | supercontig | sc0004889:8..1959 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
