Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044085 ID=TCONS_00044085|Name=TCONS_00044085|organism=Clytia hemisphaerica|type=transcript|length=921bpRun BLAST on NCBI protein sequence of TCONS_00044085-protein >TCONS_00044085-protein ID=TCONS_00044085-protein|Name=TCONS_00044085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERRun BLAST on NCBI transcript from alignment at sc0004937:1..2116- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00044085 ID=TCONS_00044085|Name=TCONS_00044085|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0004937:1..2116- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0004937:1..2116- >TCONS_00044085 ID=TCONS_00044085|Name=TCONS_00044085|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0004937:1..2116- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00044085 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 172.17 bits (435), Expect = 4.549e-48 Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGESRIT 438 GEKP+ C VCG RF +L H R+HTG KP+KCE CGK FS N++ H+ HTGEKPFKC+ C+ RF+ L+ H R+HTG P++C+ CGK+FSQ++NL H IHTGEKPF C+EC K FS L +H R HTGE T Sbjct: 539 GEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYT 684 HSP 2 Score: 168.318 bits (425), Expect = 1.105e-46 Identity = 74/141 (52.48%), Postives = 97/141 (68.79%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTG 423 GEKPF C+ C RF+Q L+AH R+HTG KP+KC+ CGK+FS + N++ H+ HTGEKPFKCE C F+ L H R+HTG P+ C+ CGK FSQ ++ H R+HTGE+P+ C CCK FS++ +LI H R HTG Sbjct: 595 GEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 HSP 3 Score: 164.851 bits (416), Expect = 1.882e-45 Identity = 76/142 (53.52%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 GEKP+ C CG F+ S ++H R+HTG KPF+C VCGK FS + H+R HTGEKP+KCEVC RF +L H R+HTG P++CE CGK FSQ +NL H +HTGEKPF C C K FS+ +L +H R HTGE Sbjct: 483 GEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGE 624 HSP 4 Score: 155.992 bits (393), Expect = 1.791e-44 Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 GEKP+ C+ CG F Q L AH+ IHTG KP++C+ CGK FS ++ H R HTGEKP+KCEVC FT + L+ H RIHTG P++C CGK FS +NL H R+HT EKP+ C EC K FS NL SH R HTGE Sbjct: 343 GEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGE 484 HSP 5 Score: 41.9726 bits (97), Expect = 1.791e-44 Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 3 Query: 426 KPYNCEICGKSFLRKAHMERHKRTHTVEKEFKCKI*VTNDSKMNY 560 KPY CE CGK F + + H+R HT EK F+C + S+ +Y Sbjct: 485 KPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSY 529 HSP 6 Score: 160.614 bits (405), Expect = 5.179e-44 Identity = 74/141 (52.48%), Postives = 96/141 (68.09%), Query Frame = 1 Query: 4 EKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 EKP+ C+ CG F+ +L +H R+HTG KP+KCE CGK FSS + + H+R HTGEKPF+C VC F+ + H R+HTG P++CEVCGK F+ NL NH R+HTGEKP+ C+EC K FS+ NL +H HTGE Sbjct: 456 EKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGE 596 HSP 7 Score: 155.606 bits (392), Expect = 5.206e-44 Identity = 74/142 (52.11%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 GEKP+ C VCG FTQ+ L+AH RIHTG KP+KC CGK FS N+ H+R HT EKP+KC+ C F++ +L H R+HTG P++CE CGK FS ++ +H R+HTGEKPF C C K FS+ +H R HTGE Sbjct: 399 GEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGE 540 HSP 8 Score: 40.817 bits (94), Expect = 5.206e-44 Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3 Query: 426 KPYNCEICGKSFLRKAHMERHKRTHTVEKEFKC 524 KPY CE CGK F + ++++ H+ HT EK FKC Sbjct: 569 KPYKCEECGKGFSQASNLQAHQSVHTGEKPFKC 601 HSP 9 Score: 160.229 bits (404), Expect = 8.775e-44 Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 GEKP+ C CG F+Q +L+AH +HTG KPFKC+ C K FS +++ H+R HTGEKP+KC+ C F+ + +L+ H IHTG PF+CE CGK FS A L+ H R+HTGEKP+ CQ+C K FS+ + +H R HTGE Sbjct: 567 GEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGE 708 HSP 10 Score: 155.992 bits (393), Expect = 2.230e-42 Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 GEKP+ C+ CG F++ L H R+HTG KP+KCEVCGK F+ + +++ H+R HTGEKP+KC C RF+ +L H R+HT P++C+ CGK FS NL +H R+HTGEKP+ C+EC K FS + SH R HTGE Sbjct: 371 GEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGE 512 HSP 11 Score: 153.68 bits (387), Expect = 1.803e-41 Identity = 73/142 (51.41%), Postives = 91/142 (64.08%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 GEKP+ C CG RF+ +L H R+HT KP+KC+ CGK FS N+ H+R HTGEKP+KCE C F+ S + H R+HTG PF C VCGK FSQ + H R+HTGEKP+ C+ C K F+ NL +H R HTGE Sbjct: 427 GEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGE 568 HSP 12 Score: 143.665 bits (361), Expect = 5.766e-38 Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 G+K + C+ CG F+Q +L+ H R+HTG KP+ C CGKSF+ ++ H HTGEKP++C+ C F+ L H R+HTG P++CEVCGK F+Q+++L H RIHTGEKP+ C +C K FS NL +H R HT E Sbjct: 315 GKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEE 456 HSP 13 Score: 119.013 bits (297), Expect = 2.167e-29 Identity = 63/170 (37.06%), Postives = 86/170 (50.59%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIH----------------------------TGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 G+K + N C F SL+ H ++H TG K + C CGK FS N++ H+R HTGEKP+ C C F L H+ IHTG P+ C+ CGK FS+ +L H R+HTGEKP+ C+ C K F+++ +L +H R HTGE Sbjct: 259 GQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGE 428 HSP 14 Score: 91.2781 bits (225), Expect = 3.566e-20 Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 28 CGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQECCKTFSRKENLISHTRSHTGE 426 CG + T K S IHTG K ++ C ++F+ ++E HK+ H G+K C E + + + TG + C CGK FSQ +NL H R+HTGEKP+ C EC K+F++ +L +H HTGE Sbjct: 241 CG-KDTLKVSPLTQRSIHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGE 372 The following BLAST results are available for this feature:
BLAST of TCONS_00044085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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