TCONS_00044097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044097
Unique NameTCONS_00044097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044097 ID=TCONS_00044097|Name=TCONS_00044097|organism=Clytia hemisphaerica|type=transcript|length=206bp
cagaTTCTATCAATTTATCTAAATCCATTTCATCCAAAACAAAAGTTGCA
ACCAAAAGGAAGCAAACGCAAAACAAGCCAAAGAAACCATGTCGAGCTGA
GCTGTTAAAAGAATGGAGAGTGCAGAAAATTAAAGACAAAACTCttgcag
aaaaaaagaagaaaacGCCCTGGCGTATTGCTATACATGTCGAGCACAAA
GCTGAT
Run BLAST on NCBI

transcript from alignment at sc0004966:1..588-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044097 ID=TCONS_00044097|Name=TCONS_00044097|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0004966:1..588- (Clytia hemisphaerica)
CAGATTCTATCAATTTATCTAAATCCATTTCATCCAAAACAAAAGTTGCA
ACCAAAAGGAAGCAAACGCAAAACAAGCCAAAGAAACCATGTCGAGCTGA
GCTGTTAAAAGAATGGAGAGTGCAGAAAATTAAAGACAAAACTCTTGCAG
AAAAAAAGAAGAAAAGTAACAGTGGTTTTATTTTGTTATTTGTGTTTATA
TTTTTTTACACTACCACAATAATAATATTGCTTTGTCTTTGTCCCTATTT
TCATCTCTCGAATAAAATCTATTTCCCTTTGTTAGATTTTATTTTTTTGT
TTGTGTTTCCTTTAAAAGTTGAAAAATTAAAAAAAGTAAATGAAACCAGT
ATTACAAATGGCAAGTTCTGGAAATGCTGCCAGAAAAGAACTAGCATCAA
TTTGTAGGTATGCAGTGGTATACAATGAAGTTAAGTATCGTGAAAGTATT
ACTCACCTTTCATGGTATTATCCTTATCAAAAGCAATCTTGTCAAAATTA
TCACCTGGTTAATCTAATTCTCATTGCGTTTTCATTTTCATTTTAAGCGC
CCTGGCGTATTGCTATACATGTCGAGCACAAAGCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027746XLOC_027746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044097-exon-sc0004966-1575043694:424..588TCONS_00044097-exon-sc0004966-1575043694:424..588Clytia hemisphaericaexon
TCONS_00044097-exon-sc0004966-1575043694:1..41TCONS_00044097-exon-sc0004966-1575043694:1..41Clytia hemisphaericaexon
TCONS_00044097-exon-sc0004966-1510915933:424..588TCONS_00044097-exon-sc0004966-1510915933:424..588Clytia hemisphaericaexon
TCONS_00044097-exon-sc0004966-1510915933:1..41TCONS_00044097-exon-sc0004966-1510915933:1..41Clytia hemisphaericaexon
TCONS_00044097-exon-sc0004966-1491911889:424..588TCONS_00044097-exon-sc0004966-1491911889:424..588Clytia hemisphaericaexon
TCONS_00044097-exon-sc0004966-1491911889:1..41TCONS_00044097-exon-sc0004966-1491911889:1..41Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004966supercontigsc0004966:1..588 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.9287	19.3779	8.65368	3.38651	76.2708	63.5281	27.5132	18.3982	29.6264	41.4836	7.74328	21.3785	5.46811	19.0037	13.0197	25.1498	55.0799	38.8129	1.62491	0	5.91167	2.16263	17.5264	11.1538	13.1293	24.8999	10.4799	2.23689	6.78641	10.3714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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