TCONS_00044111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044111
Unique NameTCONS_00044111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044111 ID=TCONS_00044111|Name=TCONS_00044111|organism=Clytia hemisphaerica|type=transcript|length=404bp
CAATGTCGTTAATCAACTGGTCAAATTCTAATAAAAAGCAAAGCTTTTAA
GAAAGTTTGTTATTAAATCTCTCACACACGCAGAAAAAAATCGATATCCA
TTTCTTTAAATTGACATTATAATGACAGGACTTATTTGGAAATGAATTTC
TAAATTGAACATGTGATAGTTtggtataatataatatatgaCTTTCCTGA
CTATACTTTATGTCAGTTTGGTCAAACTTtgttaaaatattggaaaatac
ACATGAAAGACTGCAATGGAATGATGATcagcttttttgttattttggtt
GCTGACAATATTGACACTCCCAGCGATGGTAAGGTCATAGCTGCACAATG
ACCAAAATTTGTACGTGAACATAAATTGGCAGTGACTCTGGAATGTAGTG
GCAA
Run BLAST on NCBI

transcript from alignment at sc0004986:3681..4084

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044111 ID=TCONS_00044111|Name=TCONS_00044111|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0004986:3681..4084 (Clytia hemisphaerica)
TTGCCACTACATTCCAGAGTCACTGCCAATTTATGTTCACGTACAAATTT
TGGTCATTGTGCAGCTATGACCTTACCATCGCTGGGAGTGTCAATATTGT
CAGCaaccaaaataacaaaaaagctgATCATCATTCCATTGCAGTCTTTC
ATGTgtattttccaatattttaacaAAGTTTGACCAAACTGACATAAAGT
ATAGTCAGGAAAGtcatatattatattataccaAACTATCACATGTTCAA
TTTAGAAATTCATTTCCAAATAAGTCCTGTCATTATAATGTCAATTTAAA
GAAATGGATATCGATTTTTTTCTGCGTGTGTGAGAGATTTAATAACAAAC
TTTCTTAAAAGCTTTGCTTTTTATTAGAATTTGACCAGTTGATTAACGAC
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027758XLOC_027758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044111-exon-sc0004986-1491911889:3681..4084TCONS_00044111-exon-sc0004986-1491911889:3681..4084Clytia hemisphaericaexon
TCONS_00044111-exon-sc0004986-1510915933:3681..4084TCONS_00044111-exon-sc0004986-1510915933:3681..4084Clytia hemisphaericaexon
TCONS_00044111-exon-sc0004986-1575043694:3681..4084TCONS_00044111-exon-sc0004986-1575043694:3681..4084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004986supercontigsc0004986:3681..4084 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12998	1.10462	0.467841	0.300891	42.4583	32.5058	44.74	47.8845	13.9816	30.34	13.3518	15.4455	6.7003	6.67558	10.1376	7.6354	4.80931	6.16205	10.2115	14.6249	15.424	22.5262	10.9574	16.0479	8.77914	12.4196	43.6058	40.1324	34.1438	24.6465
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top