TCONS_00044117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044117
Unique NameTCONS_00044117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044117 ID=TCONS_00044117|Name=TCONS_00044117|organism=Clytia hemisphaerica|type=transcript|length=375bp
NAACAATTTAATATTGctaatttgagaattttttacGAGCTACTTTTTTC
TGGGAAGCTTTCCACCCTTTTCCATGTACAGGAGTACCTTTCTTATGCGA
TTAAGGACTTAGAGCTGGCAACTAAGTACACATGGCAATCCGTGTTGCAA
TATGACGATGAATTTCGGATTTTGCAACTTACTTATGGGTTCTCGTGGAG
TACTGACCATAGCCATCTACATGAGGTTGTTCTTATACCTCGCTGGGCTG
CAAAGCTACCTCGTGGGCTTTGGCATGGCACTGATACTTCCTCACCCAAG
ATTGATTTTCTCTCCTCTGGTCTTGCGGGTAACAGTAAGGTTTCTGGTCC
TCCCACAATGACACATCTCTCGTCC
Run BLAST on NCBI

protein sequence of TCONS_00044117-protein

>TCONS_00044117-protein ID=TCONS_00044117-protein|Name=TCONS_00044117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
XQFNIANLRIFYELLFSGKLSTLFHVQEYLSYAIKDLELATKYTWQSVLQ
YDDEFRILQLTYGFSWSTDHSHLHEVVLIPRWAAKLPRGLWHGTDTSSPK
IDFLSSGLAGNSKVSGPPTMTHLSS
Run BLAST on NCBI

transcript from alignment at sc0004993:551..925

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044117 ID=TCONS_00044117|Name=TCONS_00044117|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0004993:551..925 (Clytia hemisphaerica)
GGACGAGAGATGTGTCATTGTGGGAGGACCAGAAACCTTACTGTTACCCG
CAAGACCAGAGGAGAGAAAATCAATCTTGGGTGAGGAAGTATCAGTGCCA
TGCCAAAGCCCACGAGGTAGCTTTGCAGCCCAGCGAGGTATAAGAACAAC
CTCATGTAGATGGCTATGGTCAGTACTCCACGAGAACCCATAAGTAAGTT
GCAAAATCCGAAATTCATCGTCATATTGCAACACGGATTGCCATGTGTAC
TTAGTTGCCAGCTCTAAGTCCTTAATCGCATAAGAAAGGTACTCCTGTAC
ATGGAAAAGGGTGGAAAGCTTCCCAGAAAAAAGTAGCTCgtaaaaaattc
tcaaattagCAATATTAAATTGTTN

Coding sequence (CDS) from alignment at sc0004993:551..925

>TCONS_00044117 ID=TCONS_00044117|Name=TCONS_00044117|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0004993:551..925 (Clytia hemisphaerica)
GGACGAGAGATGTGTCATTGTGGGAGGACCAGAAACCTTACTGTTACCCG
CAAGACCAGAGGAGAGAAAATCAATCTTGGGTGAGGAAGTATCAGTGCCA
TGCCAAAGCCCACGAGGTAGCTTTGCAGCCCAGCGAGGTATAAGAACAAC
CTCATGTAGATGGCTATGGTCAGTACTCCACGAGAACCCATAAGTAAGTT
GCAAAATCCGAAATTCATCGTCATATTGCAACACGGATTGCCATGTGTAC
TTAGTTGCCAGCTCTAAGTCCTTAATCGCATAAGAAAGGTACTCCTGTAC
ATGGAAAAGGGTGGAAAGCTTCCCAGAAAAAAGTAGCTCgtaaaaaattc
tcaaattagCAATATTAAATTGTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027764XLOC_027764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044117-exon-sc0004993-1491911889:551..925TCONS_00044117-exon-sc0004993-1491911889:551..925Clytia hemisphaericaexon
TCONS_00044117-exon-sc0004993-1510915933:551..925TCONS_00044117-exon-sc0004993-1510915933:551..925Clytia hemisphaericaexon
TCONS_00044117-exon-sc0004993-1575043694:551..925TCONS_00044117-exon-sc0004993-1575043694:551..925Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044117-proteinTCONS_00044117-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004993supercontigsc0004993:551..925 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401307	0.0647353	0.0914793	0	1.05398	0.564016	0	0	0.345151	0.464346	0.362913	1.28948	0.245611	0.484146	0.740936	0	0.713353	0.530492	0	0.359011	0.0859683	0	0.81525	0.667279	1.72725	0	1.44811	0	0	0.283492
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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