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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044136 ID=TCONS_00044136|Name=TCONS_00044136|organism=Clytia hemisphaerica|type=transcript|length=866bp
ATTACAAGGATGTGCTACTAAAATATCCAGATGAATTAGGTCATGATGTG
ATTCAAGAAGCATGGGAAGTTTTGGAATCTGCACCAAGTATTTTAAAGGT
CTGTTATGTTGTTCCCGTTTTGAATACTGTTGATAAAGTGGAACGTGTCG
TTGAAGTTAAAGCTCATGATGTCAAAATTGCTCATTCTCAAAATAtcgaa
aaacattcgaacgtcgttgttaaaaaacctttgaaattaTTCGTTATTCT
GaaatcaaatttgttgaaagctccaaaagtcgaaaatttctcACCGAAAG
AAACTCAAAGTGTCGAATGTAAAATCGAAAAGTTATGTCGTGCTTTCACA
GTTTTTAGCAAAGAAAAACctaaaacttttataaaaatttgtcgTGGAAA
TGTTTTAAgtgttttcaataaaattacCAAAGCTTCGAGCAAACCCGTTT
GCATAATGGAAACTGTTAAAAGTGAAACAGAAAATTGTTCTTGTGAACTT
TCAAGTGTTGCTGATGGCTATAAATCTTGTCCCAAAGTTATGAACACTGC
GATCATATTTGGTTTcattaaaatttccaaaatgaaCATTTCATTTTTGT
GTTTGAAATTCTATGATCGAGTGACATTGAGAatgttttggttttatttt
tcctttgCAGATTTTAGTTTGTTCGATTTTTCTGTTTCGATGTTGActag
ttttcttttctttgttttgtttctgtATGTTGGCAAAGTCAGCTTGTTTG
TAGTCAAGATTGGCATCTTGACGGTGGGGAGTGTTAATGCCGTTTTGGCA
TTGATTTTATGTTTGTTCTTTTGTGTAACTGTTTGATGTTCTTACAATTA
ttactttgtatttatt Run BLAST on NCBI protein sequence of TCONS_00044136-protein >TCONS_00044136-protein ID=TCONS_00044136-protein|Name=TCONS_00044136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
YKDVLLKYPDELGHDVIQEAWEVLESAPSILKVCYVVPVLNTVDKVERVV
EVKAHDVKIAHSQNIEKHSNVVVKKPLKLFVILKSNLLKAPKVENFSPKE
TQSVECKIEKLCRAFTVFSKEKPKTFIKICRGNVLSVFNKITKASSKPVC
IMETVKSETENCSCELSSVADGYKSCPKVMNTAIIFGFIKISKMNISFLC
LKFYDRVTLRMFWFYFSFADFSLFDFSVSMLTSFLFFVLFLYVGKVSLFV
VKIGILTVGSVNAVLALILCLFFCVTV Run BLAST on NCBI transcript from alignment at sc0005048:4149..5014 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044136 ID=TCONS_00044136|Name=TCONS_00044136|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0005048:4149..5014 (Clytia hemisphaerica)
aataaatacaaagtaaTAATTGTAAGAACATCAAACAGTTACACAAAAGA
ACAAACATAAAATCAATGCCAAAACGGCATTAACACTCCCCACCGTCAAG
ATGCCAATCTTGACTACAAACAAGCTGACTTTGCCAACATacagaaacaa
aacaaagaaaagaaaactagTCAACATCGAAACAGAAAAATCGAACAAAC
TAAAATCTGcaaaggaaaaataaaaccaaaacatTCTCAATGTCACTCGA
TCATAGAATTTCAAACACAAAAATGAAATGttcattttggaaattttaat
gAAACCAAATATGATCGCAGTGTTCATAACTTTGGGACAAGATTTATAGC
CATCAGCAACACTTGAAAGTTCACAAGAACAATTTTCTGTTTCACTTTTA
ACAGTTTCCATTATGCAAACGGGTTTGCTCGAAGCTTTGgtaattttatt
gaaaacacTTAAAACATTTCCAcgacaaatttttataaaagttttagGTT
TTTCTTTGCTAAAAACTGTGAAAGCACGACATAACTTTTCGATTTTACAT
TCGACACTTTGAGTTTCTTTCGGTgagaaattttcgacttttggagcttt
caacaaatttgatttCAGAATAACGAAtaatttcaaaggttttttaacaa
cgacgttcgaatgtttttcgaTATTTTGAGAATGAGCAATTTTGACATCA
TGAGCTTTAACTTCAACGACACGTTCCACTTTATCAACAGTATTCAAAAC
GGGAACAACATAACAGACCTTTAAAATACTTGGTGCAGATTCCAAAACTT
CCCATGCTTCTTGAATCACATCATGACCTAATTCATCTGGATATTTTAGT
AGCACATCCTTGTAAT Coding sequence (CDS) from alignment at sc0005048:4149..5014 >TCONS_00044136 ID=TCONS_00044136|Name=TCONS_00044136|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0005048:4149..5014 (Clytia hemisphaerica)
TCAAACAGTTACACAAAAGAACAAACATAAAATCAATGCCAAAACGGCAT
TAACACTCCCCACCGTCAAGATGCCAATCTTGACTACAAACAAGCTGACT
TTGCCAACATacagaaacaaaacaaagaaaagaaaactagTCAACATCGA
AACAGAAAAATCGAACAAACTAAAATCTGcaaaggaaaaataaaaccaaa
acatTCTCAATGTCACTCGATCATAGAATTTCAAACACAAAAATGAAATG
ttcattttggaaattttaatgAAACCAAATATGATCGCAGTGTTCATAAC
TTTGGGACAAGATTTATAGCCATCAGCAACACTTGAAAGTTCACAAGAAC
AATTTTCTGTTTCACTTTTAACAGTTTCCATTATGCAAACGGGTTTGCTC
GAAGCTTTGgtaattttattgaaaacacTTAAAACATTTCCAcgacaaat
ttttataaaagttttagGTTTTTCTTTGCTAAAAACTGTGAAAGCACGAC
ATAACTTTTCGATTTTACATTCGACACTTTGAGTTTCTTTCGGTgagaaa
ttttcgacttttggagctttcaacaaatttgatttCAGAATAACGAAtaa
tttcaaaggttttttaacaacgacgttcgaatgtttttcgaTATTTTGAG
AATGAGCAATTTTGACATCATGAGCTTTAACTTCAACGACACGTTCCACT
TTATCAACAGTATTCAAAACGGGAACAACATAACAGACCTTTAAAATACT
TGGTGCAGATTCCAAAACTTCCCATGCTTCTTGAATCACATCATGACCTA
ATTCATCTGGATATTTTAGTAGCACATCCTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044136-exon-sc0005048-1491911889:4149..5014 | TCONS_00044136-exon-sc0005048-1491911889:4149..5014 | Clytia hemisphaerica | exon |
| TCONS_00044136-exon-sc0005048-1510915933:4149..5014 | TCONS_00044136-exon-sc0005048-1510915933:4149..5014 | Clytia hemisphaerica | exon |
| TCONS_00044136-exon-sc0005048-1575043694:4149..5014 | TCONS_00044136-exon-sc0005048-1575043694:4149..5014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005048 | supercontig | sc0005048:4149..5014 . |
Blast
The following BLAST results are available for this feature:
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