TCONS_00044138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044138
Unique NameTCONS_00044138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044138 ID=TCONS_00044138|Name=TCONS_00044138|organism=Clytia hemisphaerica|type=transcript|length=265bp
GCAAAGGACATTTCCCGAGGAGAGATAAACGAAGGCAAGAAAACTTGGAC
AAACTGCTCCAGTTGTATTATATGGCTGAGGAGTATATGCTGCATGAACT
ACAGCAAAAAATACTTCAGCAGGTATTACAAGAAAGTCTCTGCATCCAAG
GTGAATCAGTCGAATTCATAATTGGCTTAATGAAAATGGCAGATACAATG
TCAAACAGTAAAGCTGTCGATAACTGCCTTGTAAATATAACAAAAACATT
TAAGGGATACACTAC
Run BLAST on NCBI

transcript from alignment at sc0005055:751..1741+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044138 ID=TCONS_00044138|Name=TCONS_00044138|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at sc0005055:751..1741+ (Clytia hemisphaerica)
GCAAAGGACATTTCCCGAGGAGAGGTAAGAGTAataataacaagcaacat
gctgaatggacctacatGATGAAGATAATCAAATAataataggacaaata
gcaagagagtaagaaagtgtagtgagcagcttgaataaattaccgtgagt
atcacagctcgatggaacgaacgaacgaacgaacgaacgaacgaacgaac
gaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgagatGTCATCAAGTT
TTTTAAGACAATGAGCCAAGTGATGAGAAAGTAAGGAAGTGTGAGGTTAA
GACTTAAGAACCTGTATAGTAAGAATGATTTTCGATTAGTTGAAAAGAAC
CGTTATTTACAACAGAATAGTTTATATTGATTTACAGAAAGTTTGGGTGG
CGCTTGCTTTGGATAAAATTAAAATACTGCATCTTTGAATGTAATAGGTT
ATGGCAAGGATAGCTCataaatgtctttttttataagaaatggcCTTGCG
TACTTAGGAATAATTGGTAATTAATATTCTCTAAAAATAGCATTCTTAAG
TTCTGTTGCCAAaatccatgatggtgatattcttgtagcataatcttaat
tttttgaccaaacttaaaaaaatagCGGGTGAGACCAAGGTGAGACAAAA
GTTGTTGGGCAATTATTTCAACTGTATCAAATGGTTCTCATTTAATTTAG
ATAAACGAAGGCAAGAAAACTTGGACAAACTGCTCCAGTTGTATTATATG
GCTGAGGAGTATATGCTGCATGAACTACAGCAAAAAATACTTCAGCAGGT
ATTACAAGAAAGTCTCTGCATCCAAGGTGAATCAGTCGAATTCATAATTG
GCTTAATGAAAATGGCAGATACAATGTCAAACAGTAAAGCTGTCGATAAC
TGCCTTGTAAATATAACAAAAACATTTAAGGGATACACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027785XLOC_027785Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044138-exon-sc0005055-1491911889:751..774TCONS_00044138-exon-sc0005055-1491911889:751..774Clytia hemisphaericaexon
TCONS_00044138-exon-sc0005055-1510915933:751..774TCONS_00044138-exon-sc0005055-1510915933:751..774Clytia hemisphaericaexon
TCONS_00044138-exon-sc0005055-1575043694:751..774TCONS_00044138-exon-sc0005055-1575043694:751..774Clytia hemisphaericaexon
TCONS_00044138-exon-sc0005055-1491911889:1501..1741TCONS_00044138-exon-sc0005055-1491911889:1501..1741Clytia hemisphaericaexon
TCONS_00044138-exon-sc0005055-1510915933:1501..1741TCONS_00044138-exon-sc0005055-1510915933:1501..1741Clytia hemisphaericaexon
TCONS_00044138-exon-sc0005055-1575043694:1501..1741TCONS_00044138-exon-sc0005055-1575043694:1501..1741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005055supercontigsc0005055:751..1741 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.689804	0.674866	0	0	0	0	1.54017	0.635914	0	0.405745	5.26736	2.10392	2.76754	9.28123	4.11614	2.34384	5.82865	14.2316	1.17808	2.58582	1.39707	3.17534	2.61642	7.00529	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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