TCONS_00044165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044165
Unique NameTCONS_00044165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044165 ID=TCONS_00044165|Name=TCONS_00044165|organism=Clytia hemisphaerica|type=transcript|length=379bp
TAAAAACAGTTAAATTTAAAGTTATGCGAACTAGGTGTACGTGTACTAAC
TTTACAGTACCAGCCATTCTGTGCAGTCGAAAAATAAACATATTACAACA
GTttaatttttaactttaaaattcGAAGAATTTGCAAAAGACAATTTTTG
GCTTTTAGCTTCTATTTCTGTTTGTAAATTATCTAGGTTTTTATCCGGTT
CCTTCTGTCTTCTCTTCAGAGCTAATGCTGATTAATGCTAATTAGTCTGA
GTGATTAAAGACGCTATTTTTCCTGGCAGCTTTTCTGCCCTGCTGACTAG
ATTGATAAAATCACTGTCGTCAAGCGATTTGCAAAACTTTCTTCCCTTGC
CAGGAGCTTATTGACTATTGAGGTCTCTT
Run BLAST on NCBI

transcript from alignment at sc0005094:2344..2722

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044165 ID=TCONS_00044165|Name=TCONS_00044165|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0005094:2344..2722 (Clytia hemisphaerica)
AAGAGACCTCAATAGTCAATAAGCTCCTGGCAAGGGAAGAAAGTTTTGCA
AATCGCTTGACGACAGTGATTTTATCAATCTAGTCAGCAGGGCAGAAAAG
CTGCCAGGAAAAATAGCGTCTTTAATCACTCAGACTAATTAGCATTAATC
AGCATTAGCTCTGAAGAGAAGACAGAAGGAACCGGATAAAAACCTAGATA
ATTTACAAACAGAAATAGAAGCTAAAAGCCAAAAATTGTCTTTTGCAAAT
TCTTCgaattttaaagttaaaaattaaACTGTTGTAATATGTTTATTTTT
CGACTGCACAGAATGGCTGGTACTGTAAAGTTAGTACACGTACACCTAGT
TCGCATAACTTTAAATTTAACTGTTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027811XLOC_027811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044165-exon-sc0005094-1491911889:2344..2722TCONS_00044165-exon-sc0005094-1491911889:2344..2722Clytia hemisphaericaexon
TCONS_00044165-exon-sc0005094-1510915933:2344..2722TCONS_00044165-exon-sc0005094-1510915933:2344..2722Clytia hemisphaericaexon
TCONS_00044165-exon-sc0005094-1575043694:2344..2722TCONS_00044165-exon-sc0005094-1575043694:2344..2722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005094supercontigsc0005094:2344..2722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.626078	0.610524	2.12663	0.924701	0	0.222393	0.804922	0.251186	0.351722	0	0	0	0	0	0	0.254343	0.156665	0	0.44369	0.232145	0	0	0.239283	0.217543	0	0.399944	0.858477	0	0.231633	1.41598
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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