TCONS_00044177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044177
Unique NameTCONS_00044177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044177 ID=TCONS_00044177|Name=TCONS_00044177|organism=Clytia hemisphaerica|type=transcript|length=805bp
TTTCAGATGGAAAAATTGGCTGAATATCTACACGAACCATTGAACAACTC
TTTAGCTTAACAAACTATTCATCACATTACAATTAGTctcaatattaaaa
aaaggtatgtgtgtttttcaatgcctaagatgattgaataggttttgaga
ttgaaatattaaGTAAGCAAGTCAATTTTCcgctttttttcgggacacac
aGTACATTCTAGCCTTACTACAAGGCGGTCACAGCATCGGTCAAAAAGTA
CTGCTTACACTGCTTAGTATGTTATGTGACGTCCAAAAAGGTACTTTACA
AAGGAGGGAGACCAAAATCGTAAGGTTTTATTTAATACGTAAAATAGCCA
ATCCATCCTAAAgcgatactttaatgggataaaatttcgtggatttcgcg
gattaaggtactctgtaccagagtgtatctcacgatcaTCGTAGCGTAgt
tcactctgtgcgcattgtctgtttgataaaagtttttccgtacggagacc
tctgcgatgaagtataattttgaaataaaatggccgccaaagtacgacaa
ttgtaaacaaagggaTGTGGTCCATTGATGGTCACTTTCTAAGCAtgttt
tggctgtttttttaatgtttttgagccaaaactaaaagctgaaaagtaaC
GAAGACAGAAGACTGTGTTACCTTCACTCAAACCTAAGATCGAAAAACCT
TTTAAAAGCTGTGTGGTTTACAAAATTGTCTGTTCACGATGCAAATCGTG
CTATGTTGGATATACATGCCGACATCTTATCACGCGGATAAAGGAACATC
GATCA
Run BLAST on NCBI

transcript from alignment at sc0005117:3559..4363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044177 ID=TCONS_00044177|Name=TCONS_00044177|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0005117:3559..4363 (Clytia hemisphaerica)
TGATCGATGTTCCTTTATCCGCGTGATAAGATGTCGGCATGTATATCCAA
CATAGCACGATTTGCATCGTGAACAGACAATTTTGTAAACCACACAGCTT
TTAAAAGGTTTTTCGATCTTAGGTTTGAGTGAAGGTAACACAGTCTTCTG
TCTTCGttacttttcagcttttagttttggctcaaaaacattaaaaaaac
agccaaaacaTGCTTAGAAAGTGACCATCAATGGACCACAtccctttgtt
tacaattgtcgtactttggcggccattttatttcaaaattatacttcatc
gcagaggtctccgtacggaaaaacttttatcaaacagacaatgcgcacag
agtgaacTACGCTACGAtgatcgtgagatacactctggtacagagtacct
taatccgcgaaatccacgaaattttatcccattaaagtatcgcTTTAGGA
TGGATTGGCTATTTTACGTATTAAATAAAACCTTACGATTTTGGTCTCCC
TCCTTTGTAAAGTACCTTTTTGGACGTCACATAACATACTAAGCAGTGTA
AGCAGTACTTTTTGACCGATGCTGTGACCGCCTTGTAGTAAGGCTAGAAT
GTACtgtgtgtcccgaaaaaaagcgGAAAATTGACTTGCTTACttaatat
ttcaatctcaaaacctattcaatcatcttaggcattgaaaaacacacata
cctttttttaatattgagACTAATTGTAATGTGATGAATAGTTTGTTAAG
CTAAAGAGTTGTTCAATGGTTCGTGTAGATATTCAGCCAATTTTTCCATC
TGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027823XLOC_027823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044177-exon-sc0005117-1491911889:3559..4363TCONS_00044177-exon-sc0005117-1491911889:3559..4363Clytia hemisphaericaexon
TCONS_00044177-exon-sc0005117-1510915933:3559..4363TCONS_00044177-exon-sc0005117-1510915933:3559..4363Clytia hemisphaericaexon
TCONS_00044177-exon-sc0005117-1575043694:3559..4363TCONS_00044177-exon-sc0005117-1575043694:3559..4363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005117supercontigsc0005117:3559..4363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39378	2.50697	4.66466	3.14018	3.52777	2.54488	2.0225	3.04095	3.26879	3.36374	1.45491	3.21838	2.59948	3.81892	2.57139	2.73173	2.54318	1.89822	1.48546	2.94599	2.12987	1.54414	1.85149	1.76671	3.0713	3.7616	3.02916	1.99653	2.3078	1.81727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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