TCONS_00044198 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044198
Unique NameTCONS_00044198
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044198 ID=TCONS_00044198|Name=TCONS_00044198|organism=Clytia hemisphaerica|type=transcript|length=880bp
GCTTCGTGCACAAATTCAACGACATCATCCGCACAGTTTGGAAGATGTCA
CCCATCACCATTTCATTCCCGCACTGTGCGACGGTAGAACTTGCAACGAC
CACGAACATCAATTACTTTCGTTACCTCTGAAGCTTGGTGGTTTGGGAAT
TATCAATGTTTTGGAGACCTGCGAACTTGAATTCAAACAATCCGTCAAAG
TCAAGTGAAATCTTGTCAGAAAGAAAACCTGAATTCTCAAACCTaattta
gctctagtttagacagtTTTTACGAAAGTCGGCAGGAAATCGACTGACTA
AAGTCCTTGCGATGAAACTTTTAGCAAATGAAAGGAAGAGAGAACATTTA
GTGTTATAAAAATATCTATTTCTTtgtaaaatcattaaaaatatcACTAT
AGTTAATTCTAACCCCACACTGTCCAAGGTTTTTGTTGTCAACATATTTA
TTTCTTGGCTCATTAAACCATAGTAATAAAGTTTTATTATCGTGAAGAAA
TTTCTCTGCGTATGTCTGACCACGGCTTTGATATTTGTCCCACAATGCAT
CAAACATGGAATGAAACGGAAAAAATTCCGGATAATAACTTGATAAACCA
GTTCCAAATAAACCACctagaaaagtaaaaaacaaaagtgatgtcaTAAT
GTACCCAACAGAAGGGAAAAGTTCTCATTGGCAATATTCTAGACAACACT
TTTGCTAATCTCTTTTTATCCACAGTGTCTATTAGAAGAAAGAAAGGAAA
TCTCAACTGCTTAAGAAAACGTTTACTAAAGTTCAAGATTAGCATAGACT
AGTTTTTgttcatctttgattttataAAGAATGTCTCAATTTTCATTCTG
ATACCATTGGAAAGATAATCGCAAACACTA
Run BLAST on NCBI

transcript from alignment at sc0005149:202..1081

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044198 ID=TCONS_00044198|Name=TCONS_00044198|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at sc0005149:202..1081 (Clytia hemisphaerica)
TAGTGTTTGCGATTATCTTTCCAATGGTATCAGAATGAAAATTGAGACAT
TCTTtataaaatcaaagatgaacAAAAACTAGTCTATGCTAATCTTGAAC
TTTAGTAAACGTTTTCTTAAGCAGTTGAGATTTCCTTTCTTTCTTCTAAT
AGACACTGTGGATAAAAAGAGATTAGCAAAAGTGTTGTCTAGAATATTGC
CAATGAGAACTTTTCCCTTCTGTTGGGTACATTAtgacatcacttttgtt
ttttacttttctagGTGGTTTATTTGGAACTGGTTTATCAAGTTATTATC
CGGAATTTTTTCCGTTTCATTCCATGTTTGATGCATTGTGGGACAAATAT
CAAAGCCGTGGTCAGACATACGCAGAGAAATTTCTTCACGATAATAAAAC
TTTATTACTATGGTTTAATGAGCCAAGAAATAAATATGTTGACAACAAAA
ACCTTGGACAGTGTGGGGTTAGAATTAACTATAGTgatatttttaatgat
tttacaAAGAAATAGATATTTTTATAACACTAAATGTTCTCTCTTCCTTT
CATTTGCTAAAAGTTTCATCGCAAGGACTTTAGTCAGTCGATTTCCTGCC
GACTTTCGTAAAAactgtctaaactagagctaaattAGGTTTGAGAATTC
AGGTTTTCTTTCTGACAAGATTTCACTTGACTTTGACGGATTGTTTGAAT
TCAAGTTCGCAGGTCTCCAAAACATTGATAATTCCCAAACCACCAAGCTT
CAGAGGTAACGAAAGTAATTGATGTTCGTGGTCGTTGCAAGTTCTACCGT
CGCACAGTGCGGGAATGAAATGGTGATGGGTGACATCTTCCAAACTGTGC
GGATGATGTCGTTGAATTTGTGCACGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027844XLOC_027844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044198-exon-sc0005149-1491911889:202..1081TCONS_00044198-exon-sc0005149-1491911889:202..1081Clytia hemisphaericaexon
TCONS_00044198-exon-sc0005149-1510915933:202..1081TCONS_00044198-exon-sc0005149-1510915933:202..1081Clytia hemisphaericaexon
TCONS_00044198-exon-sc0005149-1575043694:202..1081TCONS_00044198-exon-sc0005149-1575043694:202..1081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005149supercontigsc0005149:202..1081 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69193	0.876511	1.61637	0.878535	4.20682	2.81719	8.70099	9.92765	3.74262	3.91839	2.3034	3.02833	2.84829	2.22762	2.04156	3.5119	3.2944	4.4344	4.27159	4.41109	6.33895	4.56307	6.48667	6.99963	7.77712	9.77805	36.6846	36.4428	2.23002	2.86995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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