TCONS_00044222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044222
Unique NameTCONS_00044222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044222 ID=TCONS_00044222|Name=TCONS_00044222|organism=Clytia hemisphaerica|type=transcript|length=266bp
ACGTTTTGATTCAAGCAAAAGGCTCTTTCGTTCCTAGCCGTTCTCAATGT
ATTTTCGTTTTTTAGGTAAGATGTTGTTTGATCATTCTCAAGTGGATCTA
CTTTTAATATCTTGGGTGCTGCCGTTCCAGTAGAGGAATACCAGGTTACA
TTGTATCTATTGTTAGCTCGGATAGTTTCTATCTCAAAGTCGCATGTAAA
ACGGATTCTCGAGTTGTGCACATCTACCGTCACTTTAGGTaatgatcttt
gttttggaaaCTCATC
Run BLAST on NCBI

transcript from alignment at sc0005190:4379..4644

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044222 ID=TCONS_00044222|Name=TCONS_00044222|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0005190:4379..4644 (Clytia hemisphaerica)
GATGAGtttccaaaacaaagatcattACCTAAAGTGACGGTAGATGTGCA
CAACTCGAGAATCCGTTTTACATGCGACTTTGAGATAGAAACTATCCGAG
CTAACAATAGATACAATGTAACCTGGTATTCCTCTACTGGAACGGCAGCA
CCCAAGATATTAAAAGTAGATCCACTTGAGAATGATCAAACAACATCTTA
CCTAAAAAACGAAAATACATTGAGAACGGCTAGGAACGAAAGAGCCTTTT
GCTTGAATCAAAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027866XLOC_027866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044222-exon-sc0005190-1491911889:4379..4644TCONS_00044222-exon-sc0005190-1491911889:4379..4644Clytia hemisphaericaexon
TCONS_00044222-exon-sc0005190-1510915933:4379..4644TCONS_00044222-exon-sc0005190-1510915933:4379..4644Clytia hemisphaericaexon
TCONS_00044222-exon-sc0005190-1575043694:4379..4644TCONS_00044222-exon-sc0005190-1575043694:4379..4644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005190supercontigsc0005190:4379..4644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.639776	0.771863	0.722608	0	0	0	7.49312	2.22466	3.8332	5.59179	10.0428	3.60553	2.25534	0.6382	1.89609	0	0	0	0	0	2.87638	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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