TCONS_00044261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044261
Unique NameTCONS_00044261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044261 ID=TCONS_00044261|Name=TCONS_00044261|organism=Clytia hemisphaerica|type=transcript|length=300bp
AGTTCAGAAAAAAGCTCCCCTTGCGTCAGCCATCTTGAATCGGTCAGAGG
ATTGGTAATTTTTACGTGACCGACAAAGAAAAACACAACCGGgtaaatca
aaatctttgcGCCTGCGCAGCACGTGCAGATGgaagctaaaattcaaaat
ggcgacgTTTGCAGAATCGCTGGAGACAAAGCTCAAAAGTTTGGAGCCAA
GCCAGACAGGAATTCAGACGCTTTCGTTGTGGATTATTCATCATAGACAT
CACAGTGGGATAATAACTAATGCTTGGGTAGATCGTGTTaaaaaaggtat
Run BLAST on NCBI

transcript from alignment at sc0005261:3388..3687

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044261 ID=TCONS_00044261|Name=TCONS_00044261|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0005261:3388..3687 (Clytia hemisphaerica)
ataccttttttAACACGATCTACCCAAGCATTAGTTATTATCCCACTGTG
ATGTCTATGATGAATAATCCACAACGAAAGCGTCTGAATTCCTGTCTGGC
TTGGCTCCAAACTTTTGAGCTTTGTCTCCAGCGATTCTGCAAAcgtcgcc
attttgaattttagcttcCATCTGCACGTGCTGCGCAGGCgcaaagattt
tgatttacCCGGTTGTGTTTTTCTTTGTCGGTCACGTAAAAATTACCAAT
CCTCTGACCGATTCAAGATGGCTGACGCAAGGGGAGCTTTTTTCTGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027899XLOC_027899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044261-exon-sc0005261-1491911889:3388..3687TCONS_00044261-exon-sc0005261-1491911889:3388..3687Clytia hemisphaericaexon
TCONS_00044261-exon-sc0005261-1510915933:3388..3687TCONS_00044261-exon-sc0005261-1510915933:3388..3687Clytia hemisphaericaexon
TCONS_00044261-exon-sc0005261-1575043694:3388..3687TCONS_00044261-exon-sc0005261-1575043694:3388..3687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005261supercontigsc0005261:3388..3687 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33594	3.41687	2.20406	3.01886	29.9264	27.3822	13.014	15.4637	2.29653	4.06375	1.97219	1.55572	1.55356	1.61339	2.21071	2.13519	2.92264	1.49781	0	0.433074	1.12926	1.65244	8.92782	6.08751	14.212	20.145	0.53384	1.13946	6.48179	9.24548
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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