TCONS_00044271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044271
Unique NameTCONS_00044271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044271 ID=TCONS_00044271|Name=TCONS_00044271|organism=Clytia hemisphaerica|type=transcript|length=392bp
tgctccacttacccttggcccttctcttaattgctgagcatcaagcagag
aggcatcaagtaccattttggtaatctttggtatgacccgatTGGGGggc
gaacccacaaccttgcgcaccgtagccggatgctctaccactacaCTACA
GACGCTAAAATCAGGAACTAGCATATTTACTTTTGGCTTTTTCAAGAAGA
AAATGTCgaacaaaaataataattgatttaagtcaatttgctcaattttt
attttatttcgagTCCATTTTTCAATTCACATTAAATGCTTCGAGCTTGG
ATTGGATTAAAACGACATGGTGCTTTAAATTTAGAAGTCCATTGTTAATT
AAACACTAAGAATATCCCCAAACATCCCCTAGTAGGAAAATC
Run BLAST on NCBI

transcript from alignment at sc0005275:4760..5151

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044271 ID=TCONS_00044271|Name=TCONS_00044271|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at sc0005275:4760..5151 (Clytia hemisphaerica)
GATTTTCCTACTAGGGGATGTTTGGGGATATTCTTAGTGTTTAATTAACA
ATGGACTTCTAAATTTAAAGCACCATGTCGTTTTAATCCAATCCAAGCTC
GAAGCATTTAATGTGAATTGAAAAATGGActcgaaataaaataaaaattg
agcaaattgacttaaatcaattattatttttgttcGACATTTTCTTCTTG
AAAAAGCCAAAAGTAAATATGCTAGTTCCTGATTTTAGCGTCTGTAGtgt
agtggtagagcatccggctacggtgcgcaaggttgtgggttcgccCCCCA
atcgggtcataccaaagattaccaaaatggtacttgatgcctctctgctt
gatgctcagcaattaagagaagggccaagggtaagtggagca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027907XLOC_027907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044271-exon-sc0005275-1491911889:4760..5151TCONS_00044271-exon-sc0005275-1491911889:4760..5151Clytia hemisphaericaexon
TCONS_00044271-exon-sc0005275-1510915933:4760..5151TCONS_00044271-exon-sc0005275-1510915933:4760..5151Clytia hemisphaericaexon
TCONS_00044271-exon-sc0005275-1575043694:4760..5151TCONS_00044271-exon-sc0005275-1575043694:4760..5151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005275supercontigsc0005275:4760..5151 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.780011	1.0466	2.32748	0	0	0	0	0	0	0	0.535067	0	0.417322	0	0.119576	0	0	0.443932	0.217972	0	0	0	0	0.219735	0.18703	0.273893	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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