TCONS_00044278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044278
Unique NameTCONS_00044278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044278 ID=TCONS_00044278|Name=TCONS_00044278|organism=Clytia hemisphaerica|type=transcript|length=300bp
aGATTGATTTGTCCAACGTACCAGTGCTTAGGCCAGACACGCGCAACAAC
AAATATCAACAGCAATGAATTTCAACAGTGTTTCCTACNAGGTCAGATAC
GCGCAACAACAAATATCAACAGCAATGAATTTCAACAGTGTTTCCTACTA
CAAGAGGATGGTTCAATCAAAACGATTCATGTTCCGTTTCATTGCTCGTT
GAGGTATTTGTTTTAAATCCTTCTTAATTGTACAGTTttaagtctccata
actcgaacacgcacggggaacacacatttgttcaagttaaggagaTTTTG
Run BLAST on NCBI

transcript from alignment at sc0005284:3947..4246

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044278 ID=TCONS_00044278|Name=TCONS_00044278|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0005284:3947..4246 (Clytia hemisphaerica)
CAAAAtctccttaacttgaacaaatgtgtgttccccgtgcgtgttcgagt
tatggagacttaaAACTGTACAATTAAGAAGGATTTAAAACAAATACCTC
AACGAGCAATGAAACGGAACATGAATCGTTTTGATTGAACCATCCTCTTG
TAGTAGGAAACACTGTTGAAATTCATTGCTGTTGATATTTGTTGTTGCGC
GTATCTGACCTNGTAGGAAACACTGTTGAAATTCATTGCTGTTGATATTT
GTTGTTGCGCGTGTCTGGCCTAAGCACTGGTACGTTGGACAAATCAATCt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027914XLOC_027914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044278-exon-sc0005284-1491911889:3947..4246TCONS_00044278-exon-sc0005284-1491911889:3947..4246Clytia hemisphaericaexon
TCONS_00044278-exon-sc0005284-1510915933:3947..4246TCONS_00044278-exon-sc0005284-1510915933:3947..4246Clytia hemisphaericaexon
TCONS_00044278-exon-sc0005284-1575043694:3947..4246TCONS_00044278-exon-sc0005284-1575043694:3947..4246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005284supercontigsc0005284:3947..4246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26862	0.379652	0.881625	0.431266	0	0.414882	0	0	0.979076	1.69399	0	1.51552	0	2.92419	1.86349	1.02404	1.58732	2.65646	0.82772	3.29191	1.86441	0.690958	1.03007	2.28355	0	0	0.786953	0.569729	0.920214	0.899086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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