TCONS_00044292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044292
Unique NameTCONS_00044292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044292 ID=TCONS_00044292|Name=TCONS_00044292|organism=Clytia hemisphaerica|type=transcript|length=587bp
CAAAGATCTATGTTTACATCAAAACAACTCAACAAGACGCCTACAACTCC
ATTCAACAAACTGACTCTATCCACACCAAATATGAGTTGTATCAAAGATA
AGAAGTGCCAGGAACCAGTGTGTGGCGTGTGGCATCCACCTTCAATTGCC
AAGCCATGTTACAAAAGCATGTCATCAACTCCTGTGCTAAGGGCATCCTG
CTCGTCACAATCCGACTCATCGATTCCTTGTGCGTCCAAATCAGCTATAc
aagGTGATGATGCTTTTGATAAATCAGCAGAAACACTAACGTTAATGAAC
AATTCAGCAGCTGCTCAATCTAACATCGAAACATCACAGCAATCCCTAAG
AGGttccaaaaatccaaaatcaaagaaaaagaccAAAGAAAGGCTCCTAT
CCATAACAAAGAGCAGCGAAGAATCAAAAACTGTGCAACTTTtgaaaata
ctgttcccagatgaGGATCTTATCAACAAATTTGCTGATGTAAGAAAGAA
ATTTCAAGCTGATCAGAGCTCGTACAAAGAAGAATACGGTCAAATATGTG
CCAAAGTTCAAGTGAAGTTGAATTTGCTTGAAATGCA
Run BLAST on NCBI

protein sequence of TCONS_00044292-protein

>TCONS_00044292-protein ID=TCONS_00044292-protein|Name=TCONS_00044292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
QRSMFTSKQLNKTPTTPFNKLTLSTPNMSCIKDKKCQEPVCGVWHPPSIA
KPCYKSMSSTPVLRASCSSQSDSSIPCASKSAIQGDDAFDKSAETLTLMN
NSAAAQSNIETSQQSLRGSKNPKSKKKTKERLLSITKSSEESKTVQLLKI
LFPDEDLINKFADVRKKFQADQSSYKEEYGQICAKVQVKLNLLEM
Run BLAST on NCBI

transcript from alignment at sc0005312:2917..4503+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044292 ID=TCONS_00044292|Name=TCONS_00044292|organism=Clytia hemisphaerica|type=transcript|length=1587bp|location=Sequence derived from alignment at sc0005312:2917..4503+ (Clytia hemisphaerica)
CAAAGATCTATGTTTACATCAAAACAACTCAACAAGACGCCTACAACTCC
ATTCAACAAACTGACTCTATCCACACCAAATATGAGTTGTATCAAAGGTA
TCCTAAGAATACTTTTATTCTCGGTTTATAAAGCAgaaattttatttcag
aaaGAGAAATCATTTTAAATAACCAAATCCTGAGTGCGAAAGACTGAAGT
TTCAGCTAAATTTCTAAAGTTACATCAACAATAACAAAATCACATACCTT
TAGATAAGAAGTGCCAGGAACCAGTGTGTGGCGTGTGGCATCCACCTTCA
ATTGCCAAGCCATGTTACAAAAGCATGTGTAAGTCTAGAAACATTTATTC
AATAGTTTGCAAACAGTACTGACAGATTTTAAATTTCTATCAAACAATTG
GCAATTGTTTATAAAAACGTATAATTTTTGAGGATAAAATTTATTGTATT
GTGTAATTTCATAAAGGAAAAAGTTTGCAAACAGTAAAAAATGTCACATT
GAATTTTTACCTTTACAGCATCAACTCCTGTGCTAAGGGCATCCTGCTCG
TCACAATCCGACTCATCGATTCCTTGTGCGTCCAAATCAGCTATAcaagg
taaaaaaaaacttataggAGTTTATTTGGATGATATATGAATTACAACTC
ACTGACTTCAACAATGCTTGAATAATAATCCCTCTACCcagtaaatgaaa
aaaatggttcaaaacaataacatacaataaaattttatttaccaCATTCC
AGGTGATGATGCTTTTGATAAATCAGCAGAAACACTAACGTTAATGAACA
ATTCAGCAGCTGCTCAATCTAACATCGAAACATCACAGCAATCCCTAAGA
GGTATAGTAATCACATTATATATAAATCTTAAAAGGCCCTCCAGGCTAAG
TAGGGTTGGGAGGGATGTATGCCTTCCTCAGATGCAGTTCAGAATCCTTA
TTAATAATATCAATTATAATTTAGGttccaaaaatccaaaatcaaagaaa
aagaccAAAGAAAGTAAGTAAATACCAAATGTTCACTTATATTAGAATTT
TCAAGCGAAATATTATACGGCTCTATAAAAAATGGGAAGAAAGAAAATCT
ANATTTTCAAGCGAAATATTATATGGCTCTTTGCTTAGAGGGTAAAGTTT
TTTGGCATTGTTCATGTTAAACAGGCTAGGGTATAAAAAATGGGaagaaa
gaaaatctatttGGGATCAAATTATTATAATGTATAGATTTGCAAGAACT
TAAACATAGGGTTTTAGAGTCCTNCGGCTCTATAAAAAATGGGaagaaag
aaaatctatttGGGATCAAATTATTATAATGTATAGATTTGCAAGAACTT
AAACATAGGGTTTTAGAGTCCTTCAATTGTTTCAATTTTAGGGCTCCTAT
CCATAACAAAGAGCAGCGAAGAATCAAAAACTGTGCAACTTTtgaaaata
ctgttcccagatgaGGATCTTATCAACAAATTTGCTGATGTAAGAAAGAA
ATTTCAAGCTGATCAGAGCTCGTACAAAGAAGAATACGGTCAAATATGTG
CCAAAGTTCAAGTGAAGTTGAATTTGCTTGAAATGCA

Coding sequence (CDS) from alignment at sc0005312:2917..4503+

>TCONS_00044292 ID=TCONS_00044292|Name=TCONS_00044292|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at sc0005312:2917..4503+ (Clytia hemisphaerica)
CAAAGATCTATGTTTACATCAAAACAACTCAACAAGACGCCTACAACTCC
ATTCAACAAACTGACTCTATCCACACCAAATATGAGTTGTATCAAAGATA
AGAAGTGCCAGGAACCAGTGTGTGGCGTGTGGCATCCACCTTCAATTGCC
AAGCCATGTTACAAAAGCATGTCATCAACTCCTGTGCTAAGGGCATCCTG
CTCGTCACAATCCGACTCATCGATTCCTTGTGCGTCCAAATCAGCTATAc
aagGTGATGATGCTTTTGATAAATCAGCAGAAACACTAACGTTAATGAAC
AATTCAGCAGCTGCTCAATCTAACATCGAAACATCACAGCAATCCCTAAG
AGGttccaaaaatccaaaatcaaagaaaaagaccAAAGAAAGGCTCCTAT
CCATAACAAAGAGCAGCGAAGAATCAAAAACTGTGCAACTTTtgaaaata
ctgttcccagatgaGGATCTTATCAACAAATTTGCTGATGTAAGAAAGAA
ATTTCAAGCTGATCAGAGCTCGTACAAAGAAGAATACGGTCAAATATGTG
CCAAAGTTCAAGTGAAGTTGAATTTGCTTGAAATGCAAAGATCTATGTTT
ACATCAAAACAACTCAACAAGACGCCTACAACTCCATTCAACAAACTGAC
TCTATCCACACCAAATATGAGTTGTATCAAAGATAAGAAGTGCCAGGAAC
CAGTGTGTGGCGTGTGGCATCCACCTTCAATTGCCAAGCCATGTTACAAA
AGCATGTCATCAACTCCTGTGCTAAGGGCATCCTGCTCGTCACAATCCGA
CTCATCGATTCCTTGTGCGTCCAAATCAGCTATAcaagGTGATGATGCTT
TTGATAAATCAGCAGAAACACTAACGTTAATGAACAATTCAGCAGCTGCT
CAATCTAACATCGAAACATCACAGCAATCCCTAAGAGGttccaaaaatcc
aaaatcaaagaaaaagaccAAAGAAAGGCTCCTATCCATAACAAAGAGCA
GCGAAGAATCAAAAACTGTGCAACTTTtgaaaatactgttcccagatgaG
GATCTTATCAACAAATTTGCTGATGTAAGAAAGAAATTTCAAGCTGATCA
GAGCTCGTACAAAGAAGAATACGGTCAAATATGTGCCAAAGTTCAAGTGA
AGTTGAATTTGCTTGAAATGCAAAGATCTATGTTTACATCAAAACAACTC
AACAAGACGCCTACAACTCCATTCAACAAACTGACTCTATCCACACCAAA
TATGAGTTGTATCAAAGATAAGAAGTGCCAGGAACCAGTGTGTGGCGTGT
GGCATCCACCTTCAATTGCCAAGCCATGTTACAAAAGCATGTCATCAACT
CCTGTGCTAAGGGCATCCTGCTCGTCACAATCCGACTCATCGATTCCTTG
TGCGTCCAAATCAGCTATAcaagGTGATGATGCTTTTGATAAATCAGCAG
AAACACTAACGTTAATGAACAATTCAGCAGCTGCTCAATCTAACATCGAA
ACATCACAGCAATCCCTAAGAGGttccaaaaatccaaaatcaaagaaaaa
gaccAAAGAAAGGCTCCTATCCATAACAAAGAGCAGCGAAGAATCAAAAA
CTGTGCAACTTTtgaaaatactgttcccagatgaGGATCTTATCAACAAA
TTTGCTGATGTAAGAAAGAAATTTCAAGCTGATCAGAGCTCGTACAAAGA
AGAATACGGTCAAATATGTGCCAAAGTTCAAGTGAAGTTGAATTTGCTTG
AAATGCAAAGATCTATGTTTACATCAAAACAACTCAACAAGACGCCTACA
ACTCCATTCAACAAACTGACTCTATCCACACCAAATATGAGTTGTATCAA
AGATAAGAAGTGCCAGGAACCAGTGTGTGGCGTGTGGCATCCACCTTCAA
TTGCCAAGCCATGTTACAAAAGCATGTCATCAACTCCTGTGCTAAGGGCA
TCCTGCTCGTCACAATCCGACTCATCGATTCCTTGTGCGTCCAAATCAGC
TATAcaagGTGATGATGCTTTTGATAAATCAGCAGAAACACTAACGTTAA
TGAACAATTCAGCAGCTGCTCAATCTAACATCGAAACATCACAGCAATCC
CTAAGAGGttccaaaaatccaaaatcaaagaaaaagaccAAAGAAAGGCT
CCTATCCATAACAAAGAGCAGCGAAGAATCAAAAACTGTGCAACTTTtga
aaatactgttcccagatgaGGATCTTATCAACAAATTTGCTGATGTAAGA
AAGAAATTTCAAGCTGATCAGAGCTCGTACAAAGAAGAATACGGTCAAAT
ATGTGCCAAAGTTCAAGTGAAGTTGAATTTGCTTGAAATGCAAAGATCTA
TGTTTACATCAAAACAACTCAACAAGACGCCTACAACTCCATTCAACAAA
CTGACTCTATCCACACCAAATATGAGTTGTATCAAAGATAAGAAGTGCCA
GGAACCAGTGTGTGGCGTGTGGCATCCACCTTCAATTGCCAAGCCATGTT
ACAAAAGCATGTCATCAACTCCTGTGCTAAGGGCATCCTGCTCGTCACAA
TCCGACTCATCGATTCCTTGTGCGTCCAAATCAGCTATAcaagGTGATGA
TGCTTTTGATAAATCAGCAGAAACACTAACGTTAATGAACAATTCAGCAG
CTGCTCAATCTAACATCGAAACATCACAGCAATCCCTAAGAGGttccaaa
aatccaaaatcaaagaaaaagaccAAAGAAAGGCTCCTATCCATAACAAA
GAGCAGCGAAGAATCAAAAACTGTGCAACTTTtgaaaatactgttcccag
atgaGGATCTTATCAACAAATTTGCTGATGTAAGAAAGAAATTTCAAGCT
GATCAGAGCTCGTACAAAGAAGAATACGGTCAAATATGTGCCAAAGTTCA
AGTGAAGTTGAATTTGCTTGAAATGCAAAGATCTATGTTTACATCAAAAC
AACTCAACAAGACGCCTACAACTCCATTCAACAAACTGACTCTATCCACA
CCAAATATGAGTTGTATCAAAGATAAGAAGTGCCAGGAACCAGTGTGTGG
CGTGTGGCATCCACCTTCAATTGCCAAGCCATGTTACAAAAGCATGTCAT
CAACTCCTGTGCTAAGGGCATCCTGCTCGTCACAATCCGACTCATCGATT
CCTTGTGCGTCCAAATCAGCTATAcaagGTGATGATGCTTTTGATAAATC
AGCAGAAACACTAACGTTAATGAACAATTCAGCAGCTGCTCAATCTAACA
TCGAAACATCACAGCAATCCCTAAGAGGttccaaaaatccaaaatcaaag
aaaaagaccAAAGAAAGGCTCCTATCCATAACAAAGAGCAGCGAAGAATC
AAAAACTGTGCAACTTTtgaaaatactgttcccagatgaGGATCTTATCA
ACAAATTTGCTGATGTAAGAAAGAAATTTCAAGCTGATCAGAGCTCGTAC
AAAGAAGAATACGGTCAAATATGTGCCAAAGTTCAAGTGAAGTTGAATTT
GCTTGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027928XLOC_027928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044292-proteinTCONS_00044292-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044292-exon-sc0005312-1491911889:2917..3013TCONS_00044292-exon-sc0005312-1491911889:2917..3013Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1510915933:2917..3013TCONS_00044292-exon-sc0005312-1510915933:2917..3013Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1575043694:2917..3013TCONS_00044292-exon-sc0005312-1575043694:2917..3013Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1491911889:3170..3244TCONS_00044292-exon-sc0005312-1491911889:3170..3244Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1510915933:3170..3244TCONS_00044292-exon-sc0005312-1510915933:3170..3244Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1575043694:3170..3244TCONS_00044292-exon-sc0005312-1575043694:3170..3244Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1491911889:3435..3515TCONS_00044292-exon-sc0005312-1491911889:3435..3515Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1510915933:3435..3515TCONS_00044292-exon-sc0005312-1510915933:3435..3515Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1575043694:3435..3515TCONS_00044292-exon-sc0005312-1575043694:3435..3515Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1491911889:3669..3767TCONS_00044292-exon-sc0005312-1491911889:3669..3767Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1510915933:3669..3767TCONS_00044292-exon-sc0005312-1510915933:3669..3767Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1575043694:3669..3767TCONS_00044292-exon-sc0005312-1575043694:3669..3767Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1491911889:3891..3929TCONS_00044292-exon-sc0005312-1491911889:3891..3929Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1510915933:3891..3929TCONS_00044292-exon-sc0005312-1510915933:3891..3929Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1575043694:3891..3929TCONS_00044292-exon-sc0005312-1575043694:3891..3929Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1491911889:4308..4503TCONS_00044292-exon-sc0005312-1491911889:4308..4503Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1510915933:4308..4503TCONS_00044292-exon-sc0005312-1510915933:4308..4503Clytia hemisphaericaexon
TCONS_00044292-exon-sc0005312-1575043694:4308..4503TCONS_00044292-exon-sc0005312-1575043694:4308..4503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005312supercontigsc0005312:2917..4503 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187713	0	0	0	1.88387	1.92792	1.47116	0.894525	1.43893	2.06959	0.7963	0.891709	0.964165	1.03849	0.10659	0.114387	0	0.0722169	0	0	0.0907458	0	0.107614	0.0978367	0.827161	1.37831	0	0	0	0.212272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top