TCONS_00044297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044297
Unique NameTCONS_00044297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044297 ID=TCONS_00044297|Name=TCONS_00044297|organism=Clytia hemisphaerica|type=transcript|length=371bp
caaaaatcgtttaattctgataaatctacaagtcagaatcttcattttaa
tgaaaacctccgttttgggggctaTATACTGTATAAACTAAAACCCttaa
tttgaatttgaagcAAATTCGAAAAATATTCTTCGTCTCTCGAGGATCAA
ATTAGATGCAGTGAACACTATTCATAAATTTTATTGCATTCTCGTTATTT
CAGGTGTGATAGCAATACCTACACGTTGAAGTATTTGACCTCAATTCCGC
TTCAAAGTTCAACCGATGCAGAAGTTGAACTCATGGAAACCGAATAGAAT
TTTATTACGTTTTTTACAAAGGATGTTTTTATATTTCGAAAGAATTTATA
TCTATACATGGTATGGTATAT
Run BLAST on NCBI

transcript from alignment at sc0005319:1092..1462

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044297 ID=TCONS_00044297|Name=TCONS_00044297|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0005319:1092..1462 (Clytia hemisphaerica)
ATATACCATACCATGTATAGATATAAATTCTTTCGAAATATAAAAACATC
CTTTGTAAAAAACGTAATAAAATTCTATTCGGTTTCCATGAGTTCAACTT
CTGCATCGGTTGAACTTTGAAGCGGAATTGAGGTCAAATACTTCAACGTG
TAGGTATTGCTATCACACCTGAAATAACGAGAATGCAATAAAATTTATGA
ATAGTGTTCACTGCATCTAATTTGATCCTCGAGAGACGAAGAATATTTTT
CGAATTTgcttcaaattcaaattaaGGGTTTTAGTTTATACAGTATAtag
cccccaaaacggaggttttcattaaaatgaagattctgacttgtagattt
atcagaattaaacgatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027932XLOC_027932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044297-exon-sc0005319-1491911889:1092..1462TCONS_00044297-exon-sc0005319-1491911889:1092..1462Clytia hemisphaericaexon
TCONS_00044297-exon-sc0005319-1510915933:1092..1462TCONS_00044297-exon-sc0005319-1510915933:1092..1462Clytia hemisphaericaexon
TCONS_00044297-exon-sc0005319-1575043694:1092..1462TCONS_00044297-exon-sc0005319-1575043694:1092..1462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005319supercontigsc0005319:1092..1462 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.34098	7.96227	3.94215	1.62216	23.216	19.4684	24.603	21.1615	9.17735	10.8261	10.1711	8.19439	12.6734	12.0084	9.87416	14.6218	11.7499	10.968	2.43035	2.79239	11.6486	15.7294	10.7026	10.7277	30.0297	34.0649	9.54484	4.87038	11.3263	9.96542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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