TCONS_00044298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044298
Unique NameTCONS_00044298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044298 ID=TCONS_00044298|Name=TCONS_00044298|organism=Clytia hemisphaerica|type=transcript|length=836bp
GTCAGGGGCCTATCCAAACAATTGAAGttcttttgaagctttcaaCCCGT
CATTAATCTTTGGCCTTAGTTTTTTAATGTAAAATGCTTCTAAAAAGGCC
AATTGCGACCAATTATCATTCGAATCTAAGATTTTAGAATTATTCAAAAC
AGCGTTCAAAATGTGTTCTTTATGGTTAATCCCTTGTGATTCACCAAACA
ATTGTGCGAGATTAAACATGTCAGTCAAATCGTGAAAACTACTACAGTTA
TTTAAATGATGATTCATGGGTTGGTCCACTCGTTTCCCATGTTCAATCAT
GCGGGTTTTGAAACAACGGTCGGTCTTTCCAACATACCTTTCACCGCAAC
CAGGGCAAACAATTTCGTAAATAACCTTAGCTTTGTGTTCTGTTAAAACT
TTGTCTTTAGTTGGGCAGAACATGGCTAACTTTTTTGATTGATAGCGCGT
AATAAATTTTACATCGGGTTTAACGTATCTCCCCAATTTACAAATAAGTG
ATTTAACTAAGCGTTCACCATCGAGACCAAGATAAGGAACGTTAACGAAG
ATTTTGGTGATATCATCGTCGCTATTCTCATCATCAATTACGAGAGGGAG
ATTTAATTTCTCTGTTTGACGTTTAATTATACAGTTACTAATATGTGATG
GGTAGCCATTCCAAGAAAGGTACTTTCTAACAATATTGATTTGTTGTTTG
AAGAGTGATTGattcgaacaaattttatgaGCACGATTAATCAAAGATTT
AACCCAAGTAATTTTGAAGTTCCATGGGGTTTGACTAGAAAAATCACTGT
ATTGGCCTGTGTGAGTAGGTTTGTAATATATATCAG
Run BLAST on NCBI

protein sequence of TCONS_00044298-protein

>TCONS_00044298-protein ID=TCONS_00044298-protein|Name=TCONS_00044298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
DIYYKPTHTGQYSDFSSQTPWNFKITWVKSLINRAHKICSNQSLFKQQIN
IVRKYLSWNGYPSHISNCIIKRQTEKLNLPLVIDDENSDDDITKIFVNVP
YLGLDGERLVKSLICKLGRYVKPDVKFITRYQSKKLAMFCPTKDKVLTEH
KAKVIYEIVCPGCGERYVGKTDRCFKTRMIEHGKRVDQPMNHHLNNCSSF
HDLTDMFNLAQLFGESQGINHKEHILNAVLNNSKILDSNDNWSQLAFLEA
FYIKKLRPKINDGLKASKELQLFG
Run BLAST on NCBI

transcript from alignment at sc0005324:15..850

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044298 ID=TCONS_00044298|Name=TCONS_00044298|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at sc0005324:15..850 (Clytia hemisphaerica)
CTGATATATATTACAAACCTACTCACACAGGCCAATACAGTGATTTTTCT
AGTCAAACCCCATGGAACTTCAAAATTACTTGGGTTAAATCTTTGATTAA
TCGTGCtcataaaatttgttcgaatCAATCACTCTTCAAACAACAAATCA
ATATTGTTAGAAAGTACCTTTCTTGGAATGGCTACCCATCACATATTAGT
AACTGTATAATTAAACGTCAAACAGAGAAATTAAATCTCCCTCTCGTAAT
TGATGATGAGAATAGCGACGATGATATCACCAAAATCTTCGTTAACGTTC
CTTATCTTGGTCTCGATGGTGAACGCTTAGTTAAATCACTTATTTGTAAA
TTGGGGAGATACGTTAAACCCGATGTAAAATTTATTACGCGCTATCAATC
AAAAAAGTTAGCCATGTTCTGCCCAACTAAAGACAAAGTTTTAACAGAAC
ACAAAGCTAAGGTTATTTACGAAATTGTTTGCCCTGGTTGCGGTGAAAGG
TATGTTGGAAAGACCGACCGTTGTTTCAAAACCCGCATGATTGAACATGG
GAAACGAGTGGACCAACCCATGAATCATCATTTAAATAACTGTAGTAGTT
TTCACGATTTGACTGACATGTTTAATCTCGCACAATTGTTTGGTGAATCA
CAAGGGATTAACCATAAAGAACACATTTTGAACGCTGTTTTGAATAATTC
TAAAATCTTAGATTCGAATGATAATTGGTCGCAATTGGCCTTTTTAGAAG
CATTTTACATTAAAAAACTAAGGCCAAAGATTAATGACGGGttgaaagct
tcaaaagaaCTTCAATTGTTTGGATAGGCCCCTGAC

Coding sequence (CDS) from alignment at sc0005324:15..850

>TCONS_00044298 ID=TCONS_00044298|Name=TCONS_00044298|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0005324:15..850 (Clytia hemisphaerica)
GATATATATTACAAACCTACTCACACAGGCCAATACAGTGATTTTTCTAG
TCAAACCCCATGGAACTTCAAAATTACTTGGGTTAAATCTTTGATTAATC
GTGCtcataaaatttgttcgaatCAATCACTCTTCAAACAACAAATCAAT
ATTGTTAGAAAGTACCTTTCTTGGAATGGCTACCCATCACATATTAGTAA
CTGTATAATTAAACGTCAAACAGAGAAATTAAATCTCCCTCTCGTAATTG
ATGATGAGAATAGCGACGATGATATCACCAAAATCTTCGTTAACGTTCCT
TATCTTGGTCTCGATGGTGAACGCTTAGTTAAATCACTTATTTGTAAATT
GGGGAGATACGTTAAACCCGATGTAAAATTTATTACGCGCTATCAATCAA
AAAAGTTAGCCATGTTCTGCCCAACTAAAGACAAAGTTTTAACAGAACAC
AAAGCTAAGGTTATTTACGAAATTGTTTGCCCTGGTTGCGGTGAAAGGTA
TGTTGGAAAGACCGACCGTTGTTTCAAAACCCGCATGATTGAACATGGGA
AACGAGTGGACCAACCCATGAATCATCATTTAAATAACTGTAGTAGTTTT
CACGATTTGACTGACATGTTTAATCTCGCACAATTGTTTGGTGAATCACA
AGGGATTAACCATAAAGAACACATTTTGAACGCTGTTTTGAATAATTCTA
AAATCTTAGATTCGAATGATAATTGGTCGCAATTGGCCTTTTTAGAAGCA
TTTTACATTAAAAAACTAAGGCCAAAGATTAATGACGGGttgaaagcttc
aaaagaaCTTCAATTGTTTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027933XLOC_027933Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044298-proteinTCONS_00044298-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044298-exon-sc0005324-1491911889:15..850TCONS_00044298-exon-sc0005324-1491911889:15..850Clytia hemisphaericaexon
TCONS_00044298-exon-sc0005324-1510915933:15..850TCONS_00044298-exon-sc0005324-1510915933:15..850Clytia hemisphaericaexon
TCONS_00044298-exon-sc0005324-1575043694:15..850TCONS_00044298-exon-sc0005324-1575043694:15..850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005324supercontigsc0005324:15..850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.552418	0.763697	1.70935	1.60343	2.64316	1.82013	2.88395	3.26928	1.56938	1.06787	1.3553	1.66109	0.914294	0.766802	0.71129	0.279004	1.03505	0.464544	0.820812	0.533496	0.653595	0.470181	0.419489	0.66698	0.668261	1.37547	1.28138	1.06173	0.42799	0.362605
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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