TCONS_00044300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044300
Unique NameTCONS_00044300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044300 ID=TCONS_00044300|Name=TCONS_00044300|organism=Clytia hemisphaerica|type=transcript|length=1272bp
CAATAATCAAACTTTACAATCTTTTAGTTATGTttcttttaaaagtttca
aaaggtTCAAATGTTTCTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGT
AGAAATCTAACATCTCCGAAAATGGATCTCTTTTTGCTTCACGACACACA
TATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCATACCGGT
ATAGGGATTCCCTTCGCGGCAACATCTTCCATTGTTTCCCTCACAGCCAG
CGTTTCCCAGTGGAATACAGCTTCGTCTTCTTGCAAATTGGCCACGGTAG
TAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCT
CGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCAGTATAGGGAT
TCCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCC
AATGGAATACAGCTCCCTCTTCTTGCAAATTGGCCACGGTAGTAATCACT
TAAGGGATCTCTTTTTGCTTCACGACAGACATATTTTGCGTTCGAGAAAC
TTCCTTCGTTGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCA
CGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGGAAT
ACAGCTCCCTCTTCTTGCAAATTGGCCACGGTAGTAATCATTTAAGGGAT
CTCTTTTTGCTTCACGACAGACATATTTTGGGTTCGAGAAACTTCCTTCG
TTGACACATCTTCTCATTGAACCAGTATAGGGATTCCCTTCGCGACAACA
TTTCCCATTGTTTCCCTCACAGCCAGCGTTACCCAGTGGAACACAGCTTC
CTTGTACTTTTTCAAAAGCCAAAAGTGCGAAAAGTATCGTCAGTAACATT
GTCTTCATCTTCATATAATTTAAAACCTATAAAGaataattgacattttt
cataaTAATCCTTAAACTGTGTTACAAACAGTACATTTGATTAAACAACG
GTGATATATTGCTATAACAAGAAGGTGAGAGACTCCTGCCTATAGGTTCT
TCACTAGTCTCCCTAGTGCTATAATTATTAATGATTTGATGCCGAGTGCC
GAATGCCAATATGTAGTgtatctttaaaagaaaagtgACTACTAACTTCA
CTGCAACTTCAANGCCTATAGGTTCTTCACTAGTCTCCCTAGTGCTATAA
TTATTAATGATTTGATGCCGAGTGCCGAATGCCAATATGTAGTgtatctt
taaaagaaaagtgACTACTAAC
Run BLAST on NCBI

transcript from alignment at sc0005326:7730..9385+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044300 ID=TCONS_00044300|Name=TCONS_00044300|organism=Clytia hemisphaerica|type=transcript|length=1656bp|location=Sequence derived from alignment at sc0005326:7730..9385+ (Clytia hemisphaerica)
CAATAATCAAACTTTACAATCTTTTAGTTATGTttcttttaaaagtttca
aaaggtTCAAATGTTTCTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGT
AGAAATCTAACATCTCCGAAAATGGATCTCTTTTTGCTTCACGACACACA
TATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCATACCGGT
ATAGGGATTCCCTTCGCGGCAACATCTTCCATTGTTTCCCTCACAGCCAG
CGTTTCCCAGTGGAATACAGCTTCGTCTTCTTGCAAATTGGCCACGGTAG
TAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCT
CGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCAGTATAGGGAT
TCCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCC
AATGGAATACAGCTCCCTCTTCTTGCAAATTGGCCACGGTAGTAATCACT
TAAGGGATCTCTTTTTGCTTCACGACAGACATATTTTGCGTTCGAGAAAC
TTCCTTCGTTGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCA
CGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAATGGAAT
ACAGCTCCCTCTTCTTGTAAATTGACCACGGTAGTAATCACTTAAGGGGT
CTCTTTTTGCTTCACGACACACATATTTTGGGTTCGAGAAACTTCCTTCG
TTGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACA
TCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAATGGAATACAGCTCC
CTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTT
GCTTCACGACAGACATATTTTGGGTTCGAGAAACTTCCTTCGTTGACACA
TCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCCCAT
TGTTTCCCTCACAGCCAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTT
GCAAATTGGCCACGGTAGTAATCATTTAAGGGATCTCTTTTTGCTTCACG
ACAGACATATTTTGGGTTCGAGAAACTTCCTTCGTTGACACATCTTCTCA
TTGAACCAGTATAGGGATTCCCTTCGCGACAACATTTCCCATTGTTTCCC
TCACAGCCAGCGTTACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAA
AGCCAAAAGTGCGAAAAGTATCGTCAGTAACATTGTCTTCATCTTCATAT
AATTTAAAACCTATAAAGaataattgacatttttcataaTAATCCTTAAA
CTGTGTTACAAACAGTACATTTGATTAAACAACGGTGATATATTGCTATA
ACAAGAAGGTGAGAGACTCCTGCCTATAGGTTCTTCACTAGTCTCCCTAG
TGCTATAATTATTAATGATTTGATGCCGAGTGCCGAATGCCAATATGTAG
TgtatctttaaaagaaaagtgACTACTAACTTCACTGCAACTTCAANGCC
TATAGGTTCTTCACTAGTCTCCCTAGTGCTATAATTATTAATGATTTGAT
GCCGAGTGCCGAATGCCAATATGTAGTgtatctttaaaagaaaagtgACT
ACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027934XLOC_027934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044300-exon-sc0005326-1491911889:7730..8294TCONS_00044300-exon-sc0005326-1491911889:7730..8294Clytia hemisphaericaexon
TCONS_00044300-exon-sc0005326-1510915933:7730..8294TCONS_00044300-exon-sc0005326-1510915933:7730..8294Clytia hemisphaericaexon
TCONS_00044300-exon-sc0005326-1575043694:7730..8294TCONS_00044300-exon-sc0005326-1575043694:7730..8294Clytia hemisphaericaexon
TCONS_00044300-exon-sc0005326-1491911889:8679..9385TCONS_00044300-exon-sc0005326-1491911889:8679..9385Clytia hemisphaericaexon
TCONS_00044300-exon-sc0005326-1510915933:8679..9385TCONS_00044300-exon-sc0005326-1510915933:8679..9385Clytia hemisphaericaexon
TCONS_00044300-exon-sc0005326-1575043694:8679..9385TCONS_00044300-exon-sc0005326-1575043694:8679..9385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005326supercontigsc0005326:7730..9385 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.0722	50.427	55.079	51.0181	558.517	419.902	352.397	349.154	82.8452	130.735	35.2832	64.3129	42.2025	39.2604	6.96535	6.97972	13.02	18.6375	9.40247	6.84215	7.68067	7.20878	5.9632	7.55548	2.84157	1.78553	5.16965	2.35388	0.700021	0.812633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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