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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044339 ID=TCONS_00044339|Name=TCONS_00044339|organism=Clytia hemisphaerica|type=transcript|length=1085bp
CGTAGCTTTGGTTCCTTTCCAGAGCGACGAATTTTCAACGCCTCTCTGTT
CCATTTGTTCTGCATAAAGGAAGGCATCTTCCGAAGGACTGTTTGGATCA
ATTCAGGACTATCATAATTCCTGTTTTGGTAACATTTCATATTGAATTCG
AACTTCACAAGAAAAGCATAGAAATGACGAAACGCCTCTGCATCATTTGA
TTTCAGTCTGGTCCAATTTTTTAACTCCTTCAGATAATGACTGGTAACCT
TGTGTGGATCACCGTAATGCTTCTTCAACAATTCCTTTGCATGGAAATAT
CCATCGTTGGAAGATGAGAGATGAACACATCCTTTAACCAACTCTTTCGC
TTCTCCAGTTAGACAGTCCATCAGACGAAGCAAACGACTTCCAGGGtccg
aaattttcatttccaCAGATTCGACGAATGTGGcgagaaaatattcaaat
tcaagTGGGTCACCACTGAATGTATCTAACTTAACGCTTGGGGCCTGCAG
ATACCCAAACATTTCGGATAACATTCTCTCTGGACGAATTTGACTTGATG
TAGCTACTGTTGAGTCACAATCAGAGTTGATGGAAGGAACATTTTGAACG
AGAACATTCTGGAGTGGAACAGTATCATTTGGAATGTCGTGAGCTGGAAC
ATCTTGAACTTGGACGTATTGAACTGGATGGTTCTGGACTTGGAAATTCT
GGATTGGCCTTTGAACGCTCTGAATTGGCATGTTTTGTACTGAAGATGGA
ACATTCTGAATTTGGactgtttggcttggcaaggtttGGCCTGGATCGAT
AAAGCCCGATTGAACTTGACTTGACATAATGCGATCAGAAACAGCTTGGC
CATGAATGGTGTGGCTTGGAACAGCTTGGTTTGGAACAGCTTGGCTTGAC
ACGGTTGGACCTGGAACAACTCGGCCTTGAATGGTTGGGCCTGGAACGAC
TCAGCCTTGAATGGTTGGGCCTGGAACAACTCGGCTGGAGATGAATGGTC
GAGCATTAGAGCTCAGAACTGATGGAATTGGACGATTGGAAGGCACAATA
CTGGTATTTGGTTTGTATTGAGCTGAACGATTATC Run BLAST on NCBI protein sequence of TCONS_00044339-protein >TCONS_00044339-protein ID=TCONS_00044339-protein|Name=TCONS_00044339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MSSQVQSGFIDPGQTLPSQTVQIQNVPSSVQNMPIQSVQRPIQNFQVQNH
PVQYVQVQDVPAHDIPNDTVPLQNVLVQNVPSINSDCDSTVATSSQIRPE
RMLSEMFGYLQAPSVKLDTFSGDPLEFEYFLATFVESVEMKISDPGSRLL
RLMDCLTGEAKELVKGCVHLSSSNDGYFHAKELLKKHYGDPHKVTSHYLK
ELKNWTRLKSNDAEAFRHFYAFLVKFEFNMKCYQNRNYDSPELIQTVLRK
MPSFMQNKWNREALKIRRSGKEPKL Run BLAST on NCBI transcript from alignment at sc0005402:3258..4342 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044339 ID=TCONS_00044339|Name=TCONS_00044339|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at sc0005402:3258..4342 (Clytia hemisphaerica)
GATAATCGTTCAGCTCAATACAAACCAAATACCAGTATTGTGCCTTCCAA
TCGTCCAATTCCATCAGTTCTGAGCTCTAATGCTCGACCATTCATCTCCA
GCCGAGTTGTTCCAGGCCCAACCATTCAAGGCTGAGTCGTTCCAGGCCCA
ACCATTCAAGGCCGAGTTGTTCCAGGTCCAACCGTGTCAAGCCAAGCTGT
TCCAAACCAAGCTGTTCCAAGCCACACCATTCATGGCCAAGCTGTTTCTG
ATCGCATTATGTCAAGTCAAGTTCAATCGGGCTTTATCGATCCAGGCCaa
accttgccaagccaaacagtCCAAATTCAGAATGTTCCATCTTCAGTACA
AAACATGCCAATTCAGAGCGTTCAAAGGCCAATCCAGAATTTCCAAGTCC
AGAACCATCCAGTTCAATACGTCCAAGTTCAAGATGTTCCAGCTCACGAC
ATTCCAAATGATACTGTTCCACTCCAGAATGTTCTCGTTCAAAATGTTCC
TTCCATCAACTCTGATTGTGACTCAACAGTAGCTACATCAAGTCAAATTC
GTCCAGAGAGAATGTTATCCGAAATGTTTGGGTATCTGCAGGCCCCAAGC
GTTAAGTTAGATACATTCAGTGGTGACCCActtgaatttgaatattttct
cgCCACATTCGTCGAATCTGtggaaatgaaaatttcggaCCCTGGAAGTC
GTTTGCTTCGTCTGATGGACTGTCTAACTGGAGAAGCGAAAGAGTTGGTT
AAAGGATGTGTTCATCTCTCATCTTCCAACGATGGATATTTCCATGCAAA
GGAATTGTTGAAGAAGCATTACGGTGATCCACACAAGGTTACCAGTCATT
ATCTGAAGGAGTTAAAAAATTGGACCAGACTGAAATCAAATGATGCAGAG
GCGTTTCGTCATTTCTATGCTTTTCTTGTGAAGTTCGAATTCAATATGAA
ATGTTACCAAAACAGGAATTATGATAGTCCTGAATTGATCCAAACAGTCC
TTCGGAAGATGCCTTCCTTTATGCAGAACAAATGGAACAGAGAGGCGTTG
AAAATTCGTCGCTCTGGAAAGGAACCAAAGCTACG Coding sequence (CDS) from alignment at sc0005402:3258..4342 >TCONS_00044339 ID=TCONS_00044339|Name=TCONS_00044339|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0005402:3258..4342 (Clytia hemisphaerica)
ATGTCAAGTCAAGTTCAATCGGGCTTTATCGATCCAGGCCaaaccttgcc
aagccaaacagtCCAAATTCAGAATGTTCCATCTTCAGTACAAAACATGC
CAATTCAGAGCGTTCAAAGGCCAATCCAGAATTTCCAAGTCCAGAACCAT
CCAGTTCAATACGTCCAAGTTCAAGATGTTCCAGCTCACGACATTCCAAA
TGATACTGTTCCACTCCAGAATGTTCTCGTTCAAAATGTTCCTTCCATCA
ACTCTGATTGTGACTCAACAGTAGCTACATCAAGTCAAATTCGTCCAGAG
AGAATGTTATCCGAAATGTTTGGGTATCTGCAGGCCCCAAGCGTTAAGTT
AGATACATTCAGTGGTGACCCActtgaatttgaatattttctcgCCACAT
TCGTCGAATCTGtggaaatgaaaatttcggaCCCTGGAAGTCGTTTGCTT
CGTCTGATGGACTGTCTAACTGGAGAAGCGAAAGAGTTGGTTAAAGGATG
TGTTCATCTCTCATCTTCCAACGATGGATATTTCCATGCAAAGGAATTGT
TGAAGAAGCATTACGGTGATCCACACAAGGTTACCAGTCATTATCTGAAG
GAGTTAAAAAATTGGACCAGACTGAAATCAAATGATGCAGAGGCGTTTCG
TCATTTCTATGCTTTTCTTGTGAAGTTCGAATTCAATATGAAATGTTACC
AAAACAGGAATTATGATAGTCCTGAATTGATCCAAACAGTCCTTCGGAAG
ATGCCTTCCTTTATGCAGAACAAATGGAACAGAGAGGCGTTGAAAATTCG
TCGCTCTGGAAAGGAACCAAAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044339-exon-sc0005402-1491911889:3258..4342 | TCONS_00044339-exon-sc0005402-1491911889:3258..4342 | Clytia hemisphaerica | exon |
| TCONS_00044339-exon-sc0005402-1510915933:3258..4342 | TCONS_00044339-exon-sc0005402-1510915933:3258..4342 | Clytia hemisphaerica | exon |
| TCONS_00044339-exon-sc0005402-1575043694:3258..4342 | TCONS_00044339-exon-sc0005402-1575043694:3258..4342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005402 | supercontig | sc0005402:3258..4342 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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