TCONS_00044377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044377
Unique NameTCONS_00044377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044377 ID=TCONS_00044377|Name=TCONS_00044377|organism=Clytia hemisphaerica|type=transcript|length=352bp
CCTTGTCAGTCCAAAAATGTTATATACCTGGGTCGATTGCACTTATGTAT
TGACCAATAACTCCTTTTTCTCCGTGAAGATTGAATCCATAACCCGACTC
CTCTCGGATCATTTCACAAATTCTGGGAGCTTTGACCAAGCCAACATCTT
CACCCATTTTAAATCTTAGATATATTATCTACcataaaagtattttgaaa
CGAGATGAATAAAACTCGATAAACTTCTATTAAATATAtggatataaaaa
aagttaaaaaatgtggGCTTTGCcctttttcttctttcacttttttctcA
CTTTCGATTAGGTTCTATTTCCAATATGTTTCGTTGACATAACATTCAAA
AT
Run BLAST on NCBI

transcript from alignment at sc0005480:775..1126

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044377 ID=TCONS_00044377|Name=TCONS_00044377|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0005480:775..1126 (Clytia hemisphaerica)
ATTTTGAATGTTATGTCAACGAAACATATTGGAAATAGAACCTAATCGAA
AGTgagaaaaaagtgaaagaagaaaaaggGCAAAGCccacattttttaac
tttttttatatccaTATATTTAATAGAAGTTTATCGAGTTTTATTCATCT
CGtttcaaaatacttttatgGTAGATAATATATCTAAGATTTAAAATGGG
TGAAGATGTTGGCTTGGTCAAAGCTCCCAGAATTTGTGAAATGATCCGAG
AGGAGTCGGGTTATGGATTCAATCTTCACGGAGAAAAAGGAGTTATTGGT
CAATACATAAGTGCAATCGACCCAGGTATATAACATTTTTGGACTGACAA
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028009XLOC_028009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044377-exon-sc0005480-1491911889:775..1126TCONS_00044377-exon-sc0005480-1491911889:775..1126Clytia hemisphaericaexon
TCONS_00044377-exon-sc0005480-1510915933:775..1126TCONS_00044377-exon-sc0005480-1510915933:775..1126Clytia hemisphaericaexon
TCONS_00044377-exon-sc0005480-1575043694:775..1126TCONS_00044377-exon-sc0005480-1575043694:775..1126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005480supercontigsc0005480:775..1126 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.4516	0.561814	0.82447	64.9068	48.9108	19.4569	27.4723	18.8159	23.3065	18.3489	11.7314	9.57004	6.8542	13.9468	11.4899	11.5472	10.3083	6.59328	10.7631	14.8721	16.1462	7.68047	10.3447	5.32739	8.79595	31.6375	26.5033	30.5657	31.7028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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