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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044382 ID=TCONS_00044382|Name=TCONS_00044382|organism=Clytia hemisphaerica|type=transcript|length=1588bp
CTGCACAAATATCACAGATGACTTCAAAAGTAGcatgtgaaaaaaattta
ccaTGTAATCTGCGCGAATATTGCAATTTGTCCTTGGTGGTGGAATGGAC
CAATTCTTGTTTTTCATTCTCTACAATCCCCATCGAAActattaaatttt
taaattctgaaatatgAATTGTATACTGTAAATAGAAAATGCATTAGATG
ATGCAGAATTAATTTAGTtcttctaaaaattaaaaagttgaaatggcGGA
AAATTGTTTAACTGGGCTGGTTAGGGAAGTTTCTAGTTGCtagatttttt
tatctgtaGTGCCATCTTAATGACTGGAATGACAAAGGAGTAGGTCATTG
TGTCTTTCTAGCTTGAGGAACAATACTTTATTAGCTAAAATATTGATGGT
TTTCTGTCCGGAAAAGAAATCTAAATTTGTGAGAAACAAACCCACGAGGC
TAAACCAATcttgatgatttttgaaattttctggacAAGACTGCTCAGAC
TGCTTGTAATTTGTTGTTTATGTTACTAGTCAAAGTATAAATGATTTAAA
ATGACTCAAATatagaaagggtcttgaaatataagaaattgagaaaattt
ttattctGAAACAATATTTTAAAGTAGTTACATCAGAAACGGGagtaaat
ttctttgaaaaaaaaagtttaaatacaAATATGTAATTTTTATGAACGCA
TTATTTCTTTGAGGGATAAGTTACTCCTTCTAATGTTATCCAACTGATac
taataaaaatttttccaaaatacgAGAATTTATATAAATAAGttcatatt
cttttttcttttagtgaAATTTAAAGAAAGAGTACGTAGGTACTAGGACT
ACTAGCATGAAATTGTCGANTTTAGTGAAATTTAAAGAAAGAGTACTTGT
ACTAGCTAGGACTACTAGCATGAAATCGTCGCAAGACGATTGCAAAAcaa
atgaaattgttttaaaagagagcttttatatttttgttgtttgttaaTTC
CAAAAATaacaatgataataataataaaaactgGCAAGAAAATTCTGATT
TCAAATAATCACTAAGGTTCATGTATAATTTCGCTAAATAATTTACAGGG
TTTCTCGGGGGATTTGAAAATATGCATTTGTCAGGACTATTCTTGCCACA
TGCAATTTGAACAACCCCCTCTCTAtgatcaaaatataaaaataacgCAT
GCAATAGTACTAATTTTTGAGTTGCTCTCACATGgtaataaaattcaaat
ttcatatTCCTAACATAATCAAATGTTATGACGGAACAGGTCTAATAATA
GATAAGTCCCATTTTATAGCAGAGCACACTTTCCCTTTTTCTTCTTCCTT
ACTTGTAACGCAGCTCTGGTTGCAGTTTCAAAAACTTCACGAACACCATC
TTTGGTCTTGGCGGAACATTCCAGGTATGAAAATGCACTAATTTTTTCAG
CCATAGCTTTGCCATCTTCAATTTTAACTGGCTCTTGTTTCATTTTTGAA
AGCTCGTGAATAGTATTATTATCATTTCGTAAATCTTTTTTGTTACCAAC
TAAAATAATAGGTACATTTGGGCAAAAGTGTTTTACTT Run BLAST on NCBI transcript from alignment at sc0005487:1..1588 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044382 ID=TCONS_00044382|Name=TCONS_00044382|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at sc0005487:1..1588 (Clytia hemisphaerica)
AAGTAAAACACTTTTGCCCAAATGTACCTATTATTTTAGTTGGTAACAAA
AAAGATTTACGAAATGATAATAATACTATTCACGAGCTTTCAAAAATGAA
ACAAGAGCCAGTTAAAATTGAAGATGGCAAAGCTATGGCTGAAAAAATTA
GTGCATTTTCATACCTGGAATGTTCCGCCAAGACCAAAGATGGTGTTCGT
GAAGTTTTTGAAACTGCAACCAGAGCTGCGTTACAAGTAAGGAAGAAGAA
AAAGGGAAAGTGTGCTCTGCTATAAAATGGGACTTATCTATTATTAGACC
TGTTCCGTCATAACATTTGATTATGTTAGGAatatgaaatttgaatttta
ttacCATGTGAGAGCAACTCAAAAATTAGTACTATTGCATGcgttatttt
tatattttgatcaTAGAGAGGGGGTTGTTCAAATTGCATGTGGCAAGAAT
AGTCCTGACAAATGCATATTTTCAAATCCCCCGAGAAACCCTGTAAATTA
TTTAGCGAAATTATACATGAACCTTAGTGATTATTTGAAATCAGAATTTT
CTTGCcagtttttattattattatcattgttATTTTTGGAAttaacaaac
aacaaaaatataaaagctctcttttaaaacaatttcatttgTTTTGCAAT
CGTCTTGCGACGATTTCATGCTAGTAGTCCTAGCTAGTACAAGTACTCTT
TCTTTAAATTTCACTAAANTCGACAATTTCATGCTAGTAGTCCTAGTACC
TACGTACTCTTTCTTTAAATTtcactaaaagaaaaaagaatatgaaCTTA
TTTATATAAATTCTcgtattttggaaaaatttttattagtATCAGTTGGA
TAACATTAGAAGGAGTAACTTATCCCTCAAAGAAATAATGCGTTCATAAA
AATTACATATTtgtatttaaactttttttttcaaagaaatttactCCCGT
TTCTGATGTAACTACTTTAAAATATTGTTTCagaataaaaattttctcaa
tttcttatatttcaagaccctttctatATTTGAGTCATTTTAAATCATTT
ATACTTTGACTAGTAACATAAACAACAAATTACAAGCAGTCTGAGCAGTC
TTgtccagaaaatttcaaaaatcatcaagATTGGTTTAGCCTCGTGGGTT
TGTTTCTCACAAATTTAGATTTCTTTTCCGGACAGAAAACCATCAATATT
TTAGCTAATAAAGTATTGTTCCTCAAGCTAGAAAGACACAATGACCTACT
CCTTTGTCATTCCAGTCATTAAGATGGCACtacagataaaaaaatctaGC
AACTAGAAACTTCCCTAACCAGCCCAGTTAAACAATTTTCCgccatttca
actttttaatttttagaagaACTAAATTAATTCTGCATCATCTAATGCAT
TTTCTATTTACAGTATACAATTcatatttcagaatttaaaaatttaatag
TTTCGATGGGGATTGTAGAGAATGAAAAACAAGAATTGGTCCATTCCACC
ACCAAGGACAAATTGCAATATTCGCGCAGATTACAtggtaaatttttttc
acatgCTACTTTTGAAGTCATCTGTGATATTTGTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044382-exon-sc0005487-1491911889:1..1588 | TCONS_00044382-exon-sc0005487-1491911889:1..1588 | Clytia hemisphaerica | exon |
| TCONS_00044382-exon-sc0005487-1510915933:1..1588 | TCONS_00044382-exon-sc0005487-1510915933:1..1588 | Clytia hemisphaerica | exon |
| TCONS_00044382-exon-sc0005487-1575043694:1..1588 | TCONS_00044382-exon-sc0005487-1575043694:1..1588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005487 | supercontig | sc0005487:1..1588 . |
Blast
BLAST of TCONS_00044382 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 9.942e-38 Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = -3
Query: 1326 VKHFCPNVPIILVGNKKDLRNDNNTIHELSKMKQEPVKIEDGKAMAEKISAFSYLECSAKTKDGVREVFETATRAALQVRK-KKKGKC 1586
VKHFCPNVPIILVGNKKDLRND +T EL+KMKQEPVK E+G+ MA +I AF Y+ECSAKTKDGVREVFE ATRAALQ R+ KKK C
Sbjct: 103 VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGC 190
The following BLAST results are available for this feature:
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