TCONS_00044385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044385
Unique NameTCONS_00044385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044385 ID=TCONS_00044385|Name=TCONS_00044385|organism=Clytia hemisphaerica|type=transcript|length=425bp
CTGTATTCGCGTGTTGAAAAAGTTAggtaaaaaccttttttgaacCTACT
ACTGATGAAAAAAGTTAAGATatatttggacatattttaacAGGAGCGGA
ACGATTGCTCTAACGTCACATACAACACCTTGCTAGAACTCTATTTACAC
GACGCCTCTGTTGCTAATAGTAACAAAGAATACGAGAAAGGAGCTGtaga
agaaaataaagctttatCATTGCTCACAAACGCACAGGCGAAATATGACC
TAGACCATGCTATGGTGCTATCACAAATGCATAACTTCAAGAGGGGCATT
TTATTCTTATACGAAAAAGCTAAATCTTACCAACTTATTTTACGATATCA
TATGGACCATGAAGACTACGATGCTGTCATCGAGGATTGTAAAAACTATG
GGTGAGTCTTGTAACGGTTGCTTTG
Run BLAST on NCBI

transcript from alignment at sc0005490:2960..4358-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044385 ID=TCONS_00044385|Name=TCONS_00044385|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at sc0005490:2960..4358- (Clytia hemisphaerica)
CTGTATTCGCGTGTTGAAAAAGTTAGGTAAAAACCTTTTTTGAACCTACT
ACTGATGAAAAAAGTTAAGATATATTTGGACATATTTTAACAGGAGCGGA
ACGATTGCTCTAACGTCACATACAACACCTTGCTAGAACTCTATTTACAC
GACGCCTCTGTTGCTAATAGTAACAAAGAATACGAGGTATGTATACTTTA
GGGAAACTAAACTCCTTTTATAAGAATGCGAGGCTCAACTTTTGCAATCC
TAAGATCAAATGAGAAAGAGAAAATCCCAGCTAAATATTTCAAAAAAATG
TGAGAAAATGCCGAGTATGAGCATATTGTTAAGCCATCGGGTGAATAAAT
TATAGACATACAAGGATATCGAGAAAATTGAGAAAATCGGCGTGCTATTT
TGGCTAATATGTATTTTTTAATTTCCAACATTGGTAAAATTTAGTCTCTC
TTTAAATATCCTTTGACTGTTTTCACTTTATCTTTGCAGAAAGGAGCTGT
AGAAGAAAATAAAGCTTTATCATTGCTCACAAACGCACAGGTAACCTGAT
CATCGTTACTTTTCAACATCCAATCCAACAATGATAGTACTCATACTGAG
AAGCGTTTGTTTCTTAAAACTCACATCAAATATTTTTCTTGGATCAAGAA
GACCAACAGAAATTTCCATCGGATTATTATTAAACTCTGTACTGTAGATC
TATTATGTGTTTTAAAATCCTAATGGAAATTGGGCTGGTGGGGTAGAGAG
GGTGCTGGCCGAACCTTTTCAGGCCAAAATTTTTCCGGAAATATGCAAAA
GAATTAATTAGACCCCTGGAATTTCTTTTTTTGGGACCCCCTTGAAATGT
TCGTCTACCCCCATACCCCCATTTTATGGATGTGAAATGGAATGGCCCAT
TTGTAACTAAAGTTTATCCAACCAACCCTACAACCCAAAATCTTTACTTC
ACCATCAGCCAATAAACATTTTGCTTAAAACTTCAGGCGAAATATGACCT
AGACCATGCTATGGTGCTATCACAAATGCATAACTTCAAGAGGGGCATTT
TATTCTTATACGAAAAAGCTAAATCGTAAGTACTGTATTCTACTAATCAT
GTGTTTTGGCAATTTCAAAATAATGTTTTTGAAAAAAATCTCTATTCTTT
GGGCCGTCAAAAGTAGTTTCATGAATGCTTTTTCACAAAAATAAGAATTA
AAGAGGTCCGGTTCATGGCAAATAGTTTTAACCAATCAAATTAAGGTGTC
CATTAAGTAACTTTTTTAAAATGACCTGCCATTACTTTTGTTATTGTTAG
TTACCAACTTATTTTACGATATCATATGGACCATGAAGACTACGATGCTG
TCATCGAGGATTGTAAAAACTATGGGTGAGTCTTGTAACGGTTGCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028017XLOC_028017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044385-exon-sc0005490-1575043694:4173..4358TCONS_00044385-exon-sc0005490-1575043694:4173..4358Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1575043694:3819..3869TCONS_00044385-exon-sc0005490-1575043694:3819..3869Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1575043694:3284..3372TCONS_00044385-exon-sc0005490-1575043694:3284..3372Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1575043694:2960..3058TCONS_00044385-exon-sc0005490-1575043694:2960..3058Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1510915933:4173..4358TCONS_00044385-exon-sc0005490-1510915933:4173..4358Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1510915933:3819..3869TCONS_00044385-exon-sc0005490-1510915933:3819..3869Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1510915933:3284..3372TCONS_00044385-exon-sc0005490-1510915933:3284..3372Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1510915933:2960..3058TCONS_00044385-exon-sc0005490-1510915933:2960..3058Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1491911889:4173..4358TCONS_00044385-exon-sc0005490-1491911889:4173..4358Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1491911889:3819..3869TCONS_00044385-exon-sc0005490-1491911889:3819..3869Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1491911889:3284..3372TCONS_00044385-exon-sc0005490-1491911889:3284..3372Clytia hemisphaericaexon
TCONS_00044385-exon-sc0005490-1491911889:2960..3058TCONS_00044385-exon-sc0005490-1491911889:2960..3058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005490supercontigsc0005490:2960..4358 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.19023	6.42831	2.41972	1.77421	10.9046	7.72529	12.9084	12.9401	6.5232	10.4377	11.8815	8.6972	10.6143	10.2981	7.51588	11.215	10.9226	10.4877	7.37223	8.19553	8.70636	7.50301	9.71058	9.00609	12.6314	13.5507	4.86803	2.70221	7.38994	8.35932
Blast
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BLAST of TCONS_00044385 vs. Swiss-Prot (Human)
Match: VPS11 (Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens GN=VPS11 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.989e-16
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:   58 KKVKIYLDIF*QERNDCSNVTYNTLLELYLHDASVANSNKEYEKGAVEENKALSLLTNAQAKYDLDHAMVLSQMHNFKRGILFLYEKAKSYQLILRYHMDHEDYDAVIEDCKNYG 402
            +++K +L+   + + D     Y+TLLEL L + +     +  EK   E   A+SLL + +     D A+VL QMH+F+ G+L+LYE+ K +Q I+ YHM HE Y  VI  C+ +G
Sbjct:  602 RELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQVKEKLHAE---AISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVISVCERHG 713
The following BLAST results are available for this feature:
BLAST of TCONS_00044385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS113.989e-1637.39Vacuolar protein sorting-associated protein 11 hom... [more]
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