|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044391 ID=TCONS_00044391|Name=TCONS_00044391|organism=Clytia hemisphaerica|type=transcript|length=556bp
AGATCTACAAGGAAGTCCGACCTGATCTTGTCAACTTTGGTCAAAGGGTA
GCAACAGAAATATTAGCATATCATCAAGACGTCAGTAACTATGAACCTAC
TTTACACCAGTACAGTGCTTGGGGAGAACGTATTGACCATATACAGACAC
ATCCCTCGTGGAAGAAACTACATGATGTAGCTGCTGAGGAGAAACTTATA
TCTATCCCATATGAGAATAAGCAAGGCATTTGGAGTCGAACACTTCAAGT
GGCCAAACTGTATTTATTTTCCCCGTCAAGTGGATTGTATTCATGTCCTT
TGGCGATGACAGATGGTGCAGCATCCATATTGAAGTCAAGAAAAGAGGAT
GTATTCCAACAAGCATATTCTCATTTAACTTCAAACGATCCAGACTTGTT
TTGGACGTCTGGTCAATGGATGACCGAGAAAAAGGGAGGATCTGATGTCG
GTAGGTCACATAATTAAAATCCCTTCCATTCCCCATGGGGCCCAGTCTGA
AAACCAAGCAGTTGTCCACATGGAAAGCAGTTCCAATGTGTCAAGGCTAG
GGTATT Run BLAST on NCBI protein sequence of TCONS_00044391-protein >TCONS_00044391-protein ID=TCONS_00044391-protein|Name=TCONS_00044391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
IYKEVRPDLVNFGQRVATEILAYHQDVSNYEPTLHQYSAWGERIDHIQTH
PSWKKLHDVAAEEKLISIPYENKQGIWSRTLQVAKLYLFSPSSGLYSCPL
AMTDGAASILKSRKEDVFQQAYSHLTSNDPDLFWTSGQWMTEKKGGSDVG
RSHN Run BLAST on NCBI transcript from alignment at sc0005504:314..1628- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044391 ID=TCONS_00044391|Name=TCONS_00044391|organism=Clytia hemisphaerica|type=transcript|length=1315bp|location=Sequence derived from alignment at sc0005504:314..1628- (Clytia hemisphaerica)
AGATCTACAAGGAAGTCCGACCTGATCTTGTCAACTTTGGTCAAAGGGTA
GCAACAGAAATATTAGCATATCATCAAGACGTCAGTAACTATGAACCTAC
TTTACACCAGTACAGTGCTTGGGGAGAACGTATTGACCATATACAGACAC
ATCCCTCGTGGAAGAAACTACATGATGTAGCTGCTGAGGAGAAACTTATA
TCTATCCCATATGAGAATAAGCAAGGCATTTGGAGGTGAACTTGTATTAT
GACTGTGCATTTATATGATAGTGATATCAGTTCTATAAACAAGAACTTTC
TTACGGTTGTGCATCATGATATTTAATTACCCCCTTCGTTGGTGCTTTTC
CAAGAAAAGCTATTTTGGAGGTTTTGGACTATTTTATTTTTAGTTAACTG
TTAAATATTTTGAAAAAGCCTATAACGTATTTTTCTCTATTTGTTATAGT
CGAACACTTCAAGTGGCCAAACTGTATTTATTTTCCCCGTCAAGTGGATT
GTATTCATGTCCTTTGGCGATGACAGATGGTGCAGCATCCATATTGAAGG
TTGATTATAAATATTATCTCTTTTATGATTAGTAATCAAGGTGTTGTAAG
GTTTTTTGCAATCGACCTTGGAGATCACACATACTTTAATCGTGTTAATT
TCCACGTCTGAGTAAATTTTTTCTAAAAAAAAAAATTTTCACTGTCATTT
CTGGCTTATGAAATATCAAGTCGCACAGAAATTTATAAAAAAATGAACAA
TTTCATATCGGGTTCTTTTAAAACAAATTATACAATATTTATTTTTTTTA
CATACCATTGACGCTCTCTGATTCGATTTTCAAGTGGGATGGAATTGTCA
CCGAATAGAAGAGCACATCGAATTGTAGAGCCTCGTTTAAATGAGATTTT
CTTGTTGACGGTGGCTTTCAATAATGTCGAATAGTAAAACGTCGAATAAG
AGAACGCAAACAATTATAAGAAAGAGATTTTAAAGAAATATGTGTCTTTT
TCTAACTTCTTTTGTCTAATACTCGAAGACAAAATACAATACCTAAGAAA
AATGTCAAACATTGAGTATTACAACTCACTTTTACGTTTTATAGTCAAGA
AAAGAGGATGTATTCCAACAAGCATATTCTCATTTAACTTCAAACGATCC
AGACTTGTTTTGGACGTCTGGTCAATGGATGACCGAGAAAAAGGGAGGAT
CTGATGTCGGTAGGTCACATAATTAAAATCCCTTCCATTCCCCATGGGGC
CCAGTCTGAAAACCAAGCAGTTGTCCACATGGAAAGCAGTTCCAATGTGT
CAAGGCTAGGGTATT Coding sequence (CDS) from alignment at sc0005504:314..1628- >TCONS_00044391 ID=TCONS_00044391|Name=TCONS_00044391|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0005504:314..1628- (Clytia hemisphaerica)
TCAAGAAAAGAGGATGTATTCCAACAAGCATATTCTCATTTAACTTCAAA
CGATCCAGACTTGTTTTGGACGTCTGGTCAATGGATGACCGAGAAAAAGG
GAGGATCTGATGTCGGTAGGTCACATAATTAATCGAACACTTCAAGTGGC
CAAACTGTATTTATTTTCCCCGTCAAGTGGATTGTATTCATGTCCTTTGG
CGATGACAGATGGTGCAGCATCCATATTGAAGATCTACAAGGAAGTCCGA
CCTGATCTTGTCAACTTTGGTCAAAGGGTAGCAACAGAAATATTAGCATA
TCATCAAGACGTCAGTAACTATGAACCTACTTTACACCAGTACAGTGCTT
GGGGAGAACGTATTGACCATATACAGACACATCCCTCGTGGAAGAAACTA
CATGATGTAGCTGCTGAGGAGAAACTTATATCTATCCCATATGAGAATAA
GCAAGGCATTTGGAGTCAAGAAAAGAGGATGTATTCCAACAAGCATATTC
TCATTTAACTTCAAACGATCCAGACTTGTTTTGGACGTCTGGTCAATGGA
TGACCGAGAAAAAGGGAGGATCTGATGTCGGTAGGTCACATAATTAATCG
AACACTTCAAGTGGCCAAACTGTATTTATTTTCCCCGTCAAGTGGATTGT
ATTCATGTCCTTTGGCGATGACAGATGGTGCAGCATCCATATTGAAGATC
TACAAGGAAGTCCGACCTGATCTTGTCAACTTTGGTCAAAGGGTAGCAAC
AGAAATATTAGCATATCATCAAGACGTCAGTAACTATGAACCTACTTTAC
ACCAGTACAGTGCTTGGGGAGAACGTATTGACCATATACAGACACATCCC
TCGTGGAAGAAACTACATGATGTAGCTGCTGAGGAGAAACTTATATCTAT
CCCATATGAGAATAAGCAAGGCATTTGGAGTCAAGAAAAGAGGATGTATT
CCAACAAGCATATTCTCATTTAACTTCAAACGATCCAGACTTGTTTTGGA
CGTCTGGTCAATGGATGACCGAGAAAAAGGGAGGATCTGATGTCGGTAGG
TCACATAATTAATCGAACACTTCAAGTGGCCAAACTGTATTTATTTTCCC
CGTCAAGTGGATTGTATTCATGTCCTTTGGCGATGACAGATGGTGCAGCA
TCCATATTGAAGATCTACAAGGAAGTCCGACCTGATCTTGTCAACTTTGG
TCAAAGGGTAGCAACAGAAATATTAGCATATCATCAAGACGTCAGTAACT
ATGAACCTACTTTACACCAGTACAGTGCTTGGGGAGAACGTATTGACCAT
ATACAGACACATCCCTCGTGGAAGAAACTACATGATGTAGCTGCTGAGGA
GAAACTTATATCTATCCCATATGAGAATAAGCAAGGCATTTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044391-exon-sc0005504-1575043694:1394..1628 | TCONS_00044391-exon-sc0005504-1575043694:1394..1628 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1575043694:1080..1179 | TCONS_00044391-exon-sc0005504-1575043694:1080..1179 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1575043694:314..534 | TCONS_00044391-exon-sc0005504-1575043694:314..534 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1510915933:1394..1628 | TCONS_00044391-exon-sc0005504-1510915933:1394..1628 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1510915933:1080..1179 | TCONS_00044391-exon-sc0005504-1510915933:1080..1179 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1510915933:314..534 | TCONS_00044391-exon-sc0005504-1510915933:314..534 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1491911889:1394..1628 | TCONS_00044391-exon-sc0005504-1491911889:1394..1628 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1491911889:1080..1179 | TCONS_00044391-exon-sc0005504-1491911889:1080..1179 | Clytia hemisphaerica | exon |
| TCONS_00044391-exon-sc0005504-1491911889:314..534 | TCONS_00044391-exon-sc0005504-1491911889:314..534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005504 | supercontig | sc0005504:314..1628 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009100 | AcylCoA_DH/oxidase_NM_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
The following BLAST results are available for this feature:
|
