TCONS_00044392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044392
Unique NameTCONS_00044392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044392 ID=TCONS_00044392|Name=TCONS_00044392|organism=Clytia hemisphaerica|type=transcript|length=370bp
GTTCTTGTCTTTCACCTGGTGTGGGCCATAGCAAAATTTCTCATTTAAAT
GTCTCATAACTAATCAAATTGTACTTCTTATTGATAGTGCCGTGATGGCA
AACGTGTAATGGAATGTCTGAAGAAATCATTACGTATCGCTAACCAGTGT
ATGGACCCTACTGTTCAAGTGCAATTGTTTGTGGAAATCCTCAACAGATA
TCTATATTACTTTGAGAAAGGAAACGAAGCTGTAagtgattttgatttca
aatttgatagAGTATCACCCCTTTTAATGTAGACTGCTTAACGTTATTTT
TACACCTGATCATGTTTAACTGTAGGCCCAAAAATAACATCATAAGCCCG
ACCTAGCGATAAGTACCTGT
Run BLAST on NCBI

transcript from alignment at sc0005504:3724..4093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044392 ID=TCONS_00044392|Name=TCONS_00044392|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0005504:3724..4093 (Clytia hemisphaerica)
ACAGGTACTTATCGCTAGGTCGGGCTTATGATGTTATTTTTGGGCCTACA
GTTAAACATGATCAGGTGTAAAAATAACGTTAAGCAGTCTACATTAAAAG
GGGTGATACTctatcaaatttgaaatcaaaatcactTACAGCTTCGTTTC
CTTTCTCAAAGTAATATAGATATCTGTTGAGGATTTCCACAAACAATTGC
ACTTGAACAGTAGGGTCCATACACTGGTTAGCGATACGTAATGATTTCTT
CAGACATTCCATTACACGTTTGCCATCACGGCACTATCAATAAGAAGTAC
AATTTGATTAGTTATGAGACATTTAAATGAGAAATTTTGCTATGGCCCAC
ACCAGGTGAAAGACAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028024XLOC_028024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044392-exon-sc0005504-1491911889:3724..4093TCONS_00044392-exon-sc0005504-1491911889:3724..4093Clytia hemisphaericaexon
TCONS_00044392-exon-sc0005504-1510915933:3724..4093TCONS_00044392-exon-sc0005504-1510915933:3724..4093Clytia hemisphaericaexon
TCONS_00044392-exon-sc0005504-1575043694:3724..4093TCONS_00044392-exon-sc0005504-1575043694:3724..4093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005504supercontigsc0005504:3724..4093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.2203	25.4234	15.4193	20.0639	8.61781	6.13012	9.06579	12.2005	13.7727	12.6949	10.266	7.28448	11.7317	13.1316	26.0102	31.5206	28.2157	26.9663	16.6433	27.2751	12.2928	15.6663	25.0321	22.0107	0	0	16.4639	15.736	18.4446	22.4777
Blast
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BLAST of TCONS_00044392 vs. Swiss-Prot (Human)
Match: VPS35 (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.931e-20
Identity = 36/47 (76.60%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   97 GKRVMECLKKSLRIANQCMDPTVQVQLFVEILNRYLYYFEKGNEAVS 237
            GKRVMECLKK+L+IANQCMDP++QVQLF+EILNRY+Y++EK N+AV+
Sbjct:  693 GKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVT 739
The following BLAST results are available for this feature:
BLAST of TCONS_00044392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS353.931e-2076.60Vacuolar protein sorting-associated protein 35 OS=... [more]
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