TCONS_00044397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044397
Unique NameTCONS_00044397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044397 ID=TCONS_00044397|Name=TCONS_00044397|organism=Clytia hemisphaerica|type=transcript|length=387bp
atttgaattttttggtcTTACAAGGTCTGATGTAATTGAAGTTATCAGTT
GTAAGCCCAACAAAATATATTGTGATACAAGTTGCGCTGCAGACTTTCCT
GAAAGGCAAGATAAAATCCGAAGGATTAAAGAAGACGGTGCTTTGAGAGA
TATGACCAACATTCGAATACGCAATGCTGGACCAACTAGTACACTATGCA
ACAAAGCTGTTAAGGCGAGAAATGAAAAGATTCATAAACTTGTTGAATAT
GCTTCATTTGGAGACATTTCAAGTATGTTTTTAGTGTTTTTGAACGTATT
CNGGACCAACTAGTACACTATGCAACAAAGCTGTTAAGGCGAGAAATGAA
AAGATTCATAAACTTGTTGAATATGCTTCATTTGGAG
Run BLAST on NCBI

protein sequence of TCONS_00044397-protein

>TCONS_00044397-protein ID=TCONS_00044397-protein|Name=TCONS_00044397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
FEFFGLTRSDVIEVISCKPNKIYCDTSCAADFPERQDKIRRIKEDGALRD
MTNIRIRNAGPTSTLCNKAVKARNEKIHKLVEYASFGDISSMFLVFLNVF
XTN
Run BLAST on NCBI

transcript from alignment at sc0005511:386..772

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044397 ID=TCONS_00044397|Name=TCONS_00044397|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0005511:386..772 (Clytia hemisphaerica)
CTCCAAATGAAGCATATTCAACAAGTTTATGAATCTTTTCATTTCTCGCC
TTAACAGCTTTGTTGCATAGTGTACTAGTTGGTCCNGAATACGTTCAAAA
ACACTAAAAACATACTTGAAATGTCTCCAAATGAAGCATATTCAACAAGT
TTATGAATCTTTTCATTTCTCGCCTTAACAGCTTTGTTGCATAGTGTACT
AGTTGGTCCAGCATTGCGTATTCGAATGTTGGTCATATCTCTCAAAGCAC
CGTCTTCTTTAATCCTTCGGATTTTATCTTGCCTTTCAGGAAAGTCTGCA
GCGCAACTTGTATCACAATATATTTTGTTGGGCTTACAACTGATAACTTC
AATTACATCAGACCTTGTAAgaccaaaaaattcaaat

Coding sequence (CDS) from alignment at sc0005511:386..772

>TCONS_00044397 ID=TCONS_00044397|Name=TCONS_00044397|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0005511:386..772 (Clytia hemisphaerica)
CTAGTTGGTCCNGAATACGTTCAAAAACACTAAAAACATACTTGAAATGT
CTCCAAATGAAGCATATTCAACAAGTTTATGAATCTTTTCATTTCTCGCC
TTAACAGCTTTGTTGCATAGTGTACTAGTTGGTCCAGCATTGCGTATTCG
AATGTTGGTCATATCTCTCAAAGCACCGTCTTCTTTAATCCTTCGGATTT
TATCTTGCCTTTCAGGAAAGTCTGCAGCGCAACTTGTATCACAATATATT
TTGTTGGGCTTACAACTGATAACTTCAATTACATCAGACCTTGTAAgacc
aaaaaattcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028029XLOC_028029Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044397-proteinTCONS_00044397-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044397-exon-sc0005511-1491911889:386..772TCONS_00044397-exon-sc0005511-1491911889:386..772Clytia hemisphaericaexon
TCONS_00044397-exon-sc0005511-1510915933:386..772TCONS_00044397-exon-sc0005511-1510915933:386..772Clytia hemisphaericaexon
TCONS_00044397-exon-sc0005511-1575043694:386..772TCONS_00044397-exon-sc0005511-1575043694:386..772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005511supercontigsc0005511:386..772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.07514	1.06199	2.56249	1.67928	0.167957	2.08042	0	0.265483	0.132557	0.550647	0.33953	0	0.149624	0	0.635623	0.886845	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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