TCONS_00044403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044403
Unique NameTCONS_00044403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044403 ID=TCONS_00044403|Name=TCONS_00044403|organism=Clytia hemisphaerica|type=transcript|length=719bp
gtccgaactttttcgtgggtcacccggtatacttatggtaggtataAAAG
AATAATTCAATTCTTCATGGTTAGAAGGGAAGAAgaagacaaaagatttt
tagtCCAAAAGTTCACCTAAATTTTCAGATAGAGGGTACCTCTAatcttt
gtaggttttaaggagTATCCACTTGTAAATTAagttaattatattaaatt
gatgaatcatttttttacaatataacaaatcaaaaaattggCCATGAATT
AAATTTCAATCTCGAAGTCTTCACTAGCCTTCCATTTTTTATTAGAGCGT
TTAAAAAGATCCAAAATCCAGTTAGGCATAATTCCAGCCAAGACTTAGCC
AAGCTGCCTGTTTTTAACTGACATAAAATTCAccctcaaaacaaaaacaa
acaacaaagcTATGCACAAGTCCAAATGGGATATATTTACAAGCTTAAGG
ATAATCAGGGTGTGACTCGTCAACCCCTGTATATAATCCCTTTATTCTTG
TTTCTTGTCGGATGGTCGTGTAGGAGTAAGCTCCTCTTTGTTTTACTTTG
CTCCCTGAATAAAATCTTTTCAATAAGATTTTGCTTTTCGACTCGTTCGA
ACTTCAAAATAGCTTCACTCCCTGAATACGATCTTTTCAATAAGATTTCG
CTTTTCGACagtatttgtcaattttttgatgagatcgaTTGCCTCTTGGT
ACGATGACGCGTGTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0005523:3547..4265

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044403 ID=TCONS_00044403|Name=TCONS_00044403|organism=Clytia hemisphaerica|type=transcript|length=719bp|location=Sequence derived from alignment at sc0005523:3547..4265 (Clytia hemisphaerica)
GAAAAACACGCGTCATCGTACCAAGAGGCAAtcgatctcatcaaaaaatt
gacaaatactGTCGAAAAGCGAAATCTTATTGAAAAGATCGTATTCAGGG
AGTGAAGCTATTTTGAAGTTCGAACGAGTCGAAAAGCAAAATCTTATTGA
AAAGATTTTATTCAGGGAGCAAAGTAAAACAAAGAGGAGCTTACTCCTAC
ACGACCATCCGACAAGAAACAAGAATAAAGGGATTATATACAGGGGTTGA
CGAGTCACACCCTGATTATCCTTAAGCTTGTAAATATATCCCATTTGGAC
TTGTGCATAgctttgttgtttgtttttgttttgagggTGAATTTTATGTC
AGTTAAAAACAGGCAGCTTGGCTAAGTCTTGGCTGGAATTATGCCTAACT
GGATTTTGGATCTTTTTAAACGCTCTAATAAAAAATGGAAGGCTAGTGAA
GACTTCGAGATTGAAATTTAATTCATGGccaattttttgatttgttatat
tgtaaaaaaatgattcatcaatttaatataattaactTAATTTACAAGTG
GATActccttaaaacctacaaagatTAGAGGTACCCTCTATCTGAAAATT
TAGGTGAACTTTTGGactaaaaatcttttgtcttcTTCTTCCCTTCTAAC
CATGAAGAATTGAATTATTCTTTtatacctaccataagtataccgggtga
cccacgaaaaagttcggac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028035XLOC_028035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044403-exon-sc0005523-1491911889:3547..4265TCONS_00044403-exon-sc0005523-1491911889:3547..4265Clytia hemisphaericaexon
TCONS_00044403-exon-sc0005523-1510915933:3547..4265TCONS_00044403-exon-sc0005523-1510915933:3547..4265Clytia hemisphaericaexon
TCONS_00044403-exon-sc0005523-1575043694:3547..4265TCONS_00044403-exon-sc0005523-1575043694:3547..4265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005523supercontigsc0005523:3547..4265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0695642	0.0678361	0.0787642	0	1.78241	2.22393	2.41477	2.67932	1.69999	3.55793	3.45342	0.926587	9.34552	9.84956	1.42203	2.45865	4.49106	3.96088	11.0183	13.5418	13.9225	13.385	5.26422	6.01868	7.4688	6.8657	14.5941	17.1022	7.87551	5.34926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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