TCONS_00044428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044428
Unique NameTCONS_00044428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044428 ID=TCONS_00044428|Name=TCONS_00044428|organism=Clytia hemisphaerica|type=transcript|length=418bp
gcctgttagacgaaaaccgcttttttatcgcgatttaacgtcTGTTACTT
TTTGCCGTGGAATCGAATGTTCTTGGACGGGAAAGTCCGTCCAAGATTTT
CTCTTCGGCGCAGCTCATTTTGCCGTGACTTTGGACAAGCTGCACTCCAT
CGCGTgtgcttttttcgttttttaagaaGTCGCTGCATTGCTTCGATCGG
TAAAGttcaaatagattttcgaactttcgaattttgtaattcgaattttg
tgattcgaattttgaaatttttttgagagagaACCAgaatcatttgtttt
gaaaagttgaaaccaaACGAAAAAGAAACAGTATCAGTGGATGGAGGaga
aaagaagatggaaatcCTTTTTTTGCATCAACAGCAGCAGAGTTGTTGGG
TTATTTCCATAACAGGAT
Run BLAST on NCBI

transcript from alignment at sc0005557:1349..1766

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044428 ID=TCONS_00044428|Name=TCONS_00044428|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0005557:1349..1766 (Clytia hemisphaerica)
ATCCTGTTATGGAAATAACCCAACAACTCTGCTGCTGTTGATGCAAAAAA
AGgatttccatcttcttttctCCTCCATCCACTGATACTGTTTCTTTTTC
GTttggtttcaacttttcaaaacaaatgattcTGGTtctctctcaaaaaa
atttcaaaattcgaatcacaaaattcgaattacaaaattcgaaagttcga
aaatctatttgaaCTTTACCGATCGAAGCAATGCAGCGACttcttaaaaa
acgaaaaaagcacACGCGATGGAGTGCAGCTTGTCCAAAGTCACGGCAAA
ATGAGCTGCGCCGAAGAGAAAATCTTGGACGGACTTTCCCGTCCAAGAAC
ATTCGATTCCACGGCAAAAAGTAACAgacgttaaatcgcgataaaaaagc
ggttttcgtctaacaggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028060XLOC_028060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044428-exon-sc0005557-1491911889:1349..1766TCONS_00044428-exon-sc0005557-1491911889:1349..1766Clytia hemisphaericaexon
TCONS_00044428-exon-sc0005557-1510915933:1349..1766TCONS_00044428-exon-sc0005557-1510915933:1349..1766Clytia hemisphaericaexon
TCONS_00044428-exon-sc0005557-1575043694:1349..1766TCONS_00044428-exon-sc0005557-1575043694:1349..1766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005557supercontigsc0005557:1349..1766 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.31572	1.69217	3.72956	4.38963	1.76476	1.21155	1.80178	0.511708	1.78269	2.77599	3.28507	1.75202	2.22133	2.40478	1.66277	0.44136	0.670156	1.68845	2.01833	1.4374	2.78402	1.49166	1.05863	0.420532	3.29512	2.69226	3.1286	0.366582	0	1.20976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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