|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044447 ID=TCONS_00044447|Name=TCONS_00044447|organism=Clytia hemisphaerica|type=transcript|length=1344bp
AGATTGACAGCACCTCCATTCTTTCTGCTGCTTTGAAAACAAACGGAGCA
GCAGGCCCTTCCGGTATGGATGCGAACGGTTGGCGGAGAATTCTTGCCTC
CAGAAACTATGGTAAAACTGGTGAGGATTTTCGAGTTGAACTTGCAACCA
TGCTTAAAATTTTATGCCGTCAATCACTGTCCCTAGAATCGAGAGAAAGA
GACATTGAATCGTTTTTAGCATGTCGTCTAATCCCCCTAGATAAGGATCC
GGGTGTTCGACCAATTGGCATAGGCGAGGTTATTCGTAGGATTTTCGGAA
AAGCCCTTATTGCTACTGTGAAGGAGGACATTGTGAAGGCTACAGGCTCA
CTTCAGGTCTGTGCTGGACAACAGGCAGGCTGTGAAGCAGCAGTCCATTC
AATGAACtcaatctttcaagaagaaGAATCAGACGCAATCCTATTAGTAG
ACGCATCAAATGCCTTCAACTCCTTGAATCGATCCGCATTTCTACACAAC
GTCAGATCGCTTTGTCCTGCTCTTGCAACTTATGTTTACAACTGTTATTC
CAGAAAGTCACGCCTTTTTGTCGATGGAGGCATGGAAATATCTTCTGCAG
AGGGTACAACACAAGGGGACCCCCTTGCAATGCCGACATATGCCATCGGT
CTTCTCCCACTCCAGCAACTCCTGCGAGAAGAGATTGATTCGAACAATGT
AAAAAGTGTAGCATTTGCTGATGATCTAGCAGGTGCAGGCAAATTACGTG
ACCTATTGAAATGGTGGCAAGCGATCGAACGACTTGGGCCAATATTTGGA
TATCATCCAAAAGCATCAAAATCATGGCTGGTGGTCAAGGAAGAGGAGTT
GGACGAAGCTATGAGAATTTTCGCAGGGACTAATGTGAAAATTACATGTC
ATGGAAGAAAATACCTGGGAGGCACAATCGGTTCGGATACGTTTAAAGAT
GAATATTTTCGTGAACTAGTTGATAAATGGATTGAACAGATAAAGATGCT
TGCAGATATTGCTAAATCCCAACCCCAATGCGCATACAGTGCTTTCGTTG
GAGGCTTCATCCATAAGCTCACTTATCATCTCCGTGTGCTCAAAGACATT
AGCGAAATGCTCATTCCCTTCGATGAAGCTATAGACCAATACTTACTGCC
AGCCCTAACAGAGGGTCACATATGCAACAGGCTTGAGAGGCGACTTCTAG
CGTTACCAGTACGATTAGGTGGTCTGGGTATTCCAATATTTTCTGAGATA
GCTAAATATGAACACGAAAACTCATTAACAATCAGCAAAGAACTAGCTGA
CAACATTGTTGCACAAAAGGTAGAGTTCCAAGGGAATAATGCAA Run BLAST on NCBI protein sequence of TCONS_00044447-protein >TCONS_00044447-protein ID=TCONS_00044447-protein|Name=TCONS_00044447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
IDSTSILSAALKTNGAAGPSGMDANGWRRILASRNYGKTGEDFRVELATM
LKILCRQSLSLESRERDIESFLACRLIPLDKDPGVRPIGIGEVIRRIFGK
ALIATVKEDIVKATGSLQVCAGQQAGCEAAVHSMNSIFQEEESDAILLVD
ASNAFNSLNRSAFLHNVRSLCPALATYVYNCYSRKSRLFVDGGMEISSAE
GTTQGDPLAMPTYAIGLLPLQQLLREEIDSNNVKSVAFADDLAGAGKLRD
LLKWWQAIERLGPIFGYHPKASKSWLVVKEEELDEAMRIFAGTNVKITCH
GRKYLGGTIGSDTFKDEYFRELVDKWIEQIKMLADIAKSQPQCAYSAFVG
GFIHKLTYHLRVLKDISEMLIPFDEAIDQYLLPALTEGHICNRLERRLLA
LPVRLGGLGIPIFSEIAKYEHENSLTISKELADNIVAQKVEFQGNNA Run BLAST on NCBI transcript from alignment at sc0005593:15..1358 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044447 ID=TCONS_00044447|Name=TCONS_00044447|organism=Clytia hemisphaerica|type=transcript|length=1344bp|location=Sequence derived from alignment at sc0005593:15..1358 (Clytia hemisphaerica)
TTGCATTATTCCCTTGGAACTCTACCTTTTGTGCAACAATGTTGTCAGCT
AGTTCTTTGCTGATTGTTAATGAGTTTTCGTGTTCATATTTAGCTATCTC
AGAAAATATTGGAATACCCAGACCACCTAATCGTACTGGTAACGCTAGAA
GTCGCCTCTCAAGCCTGTTGCATATGTGACCCTCTGTTAGGGCTGGCAGT
AAGTATTGGTCTATAGCTTCATCGAAGGGAATGAGCATTTCGCTAATGTC
TTTGAGCACACGGAGATGATAAGTGAGCTTATGGATGAAGCCTCCAACGA
AAGCACTGTATGCGCATTGGGGTTGGGATTTAGCAATATCTGCAAGCATC
TTTATCTGTTCAATCCATTTATCAACTAGTTCACGAAAATATTCATCTTT
AAACGTATCCGAACCGATTGTGCCTCCCAGGTATTTTCTTCCATGACATG
TAATTTTCACATTAGTCCCTGCGAAAATTCTCATAGCTTCGTCCAACTCC
TCTTCCTTGACCACCAGCCATGATTTTGATGCTTTTGGATGATATCCAAA
TATTGGCCCAAGTCGTTCGATCGCTTGCCACCATTTCAATAGGTCACGTA
ATTTGCCTGCACCTGCTAGATCATCAGCAAATGCTACACTTTTTACATTG
TTCGAATCAATCTCTTCTCGCAGGAGTTGCTGGAGTGGGAGAAGACCGAT
GGCATATGTCGGCATTGCAAGGGGGTCCCCTTGTGTTGTACCCTCTGCAG
AAGATATTTCCATGCCTCCATCGACAAAAAGGCGTGACTTTCTGGAATAA
CAGTTGTAAACATAAGTTGCAAGAGCAGGACAAAGCGATCTGACGTTGTG
TAGAAATGCGGATCGATTCAAGGAGTTGAAGGCATTTGATGCGTCTACTA
ATAGGATTGCGTCTGATTCttcttcttgaaagattgaGTTCATTGAATGG
ACTGCTGCTTCACAGCCTGCCTGTTGTCCAGCACAGACCTGAAGTGAGCC
TGTAGCCTTCACAATGTCCTCCTTCACAGTAGCAATAAGGGCTTTTCCGA
AAATCCTACGAATAACCTCGCCTATGCCAATTGGTCGAACACCCGGATCC
TTATCTAGGGGGATTAGACGACATGCTAAAAACGATTCAATGTCTCTTTC
TCTCGATTCTAGGGACAGTGATTGACGGCATAAAATTTTAAGCATGGTTG
CAAGTTCAACTCGAAAATCCTCACCAGTTTTACCATAGTTTCTGGAGGCA
AGAATTCTCCGCCAACCGTTCGCATCCATACCGGAAGGGCCTGCTGCTCC
GTTTGTTTTCAAAGCAGCAGAAAGAATGGAGGTGCTGTCAATCT Coding sequence (CDS) from alignment at sc0005593:15..1358 >TCONS_00044447 ID=TCONS_00044447|Name=TCONS_00044447|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at sc0005593:15..1358 (Clytia hemisphaerica)
TGCATTATTCCCTTGGAACTCTACCTTTTGTGCAACAATGTTGTCAGCTA
GTTCTTTGCTGATTGTTAATGAGTTTTCGTGTTCATATTTAGCTATCTCA
GAAAATATTGGAATACCCAGACCACCTAATCGTACTGGTAACGCTAGAAG
TCGCCTCTCAAGCCTGTTGCATATGTGACCCTCTGTTAGGGCTGGCAGTA
AGTATTGGTCTATAGCTTCATCGAAGGGAATGAGCATTTCGCTAATGTCT
TTGAGCACACGGAGATGATAAGTGAGCTTATGGATGAAGCCTCCAACGAA
AGCACTGTATGCGCATTGGGGTTGGGATTTAGCAATATCTGCAAGCATCT
TTATCTGTTCAATCCATTTATCAACTAGTTCACGAAAATATTCATCTTTA
AACGTATCCGAACCGATTGTGCCTCCCAGGTATTTTCTTCCATGACATGT
AATTTTCACATTAGTCCCTGCGAAAATTCTCATAGCTTCGTCCAACTCCT
CTTCCTTGACCACCAGCCATGATTTTGATGCTTTTGGATGATATCCAAAT
ATTGGCCCAAGTCGTTCGATCGCTTGCCACCATTTCAATAGGTCACGTAA
TTTGCCTGCACCTGCTAGATCATCAGCAAATGCTACACTTTTTACATTGT
TCGAATCAATCTCTTCTCGCAGGAGTTGCTGGAGTGGGAGAAGACCGATG
GCATATGTCGGCATTGCAAGGGGGTCCCCTTGTGTTGTACCCTCTGCAGA
AGATATTTCCATGCCTCCATCGACAAAAAGGCGTGACTTTCTGGAATAAC
AGTTGTAAACATAAGTTGCAAGAGCAGGACAAAGCGATCTGACGTTGTGT
AGAAATGCGGATCGATTCAAGGAGTTGAAGGCATTTGATGCGTCTACTAA
TAGGATTGCGTCTGATTCttcttcttgaaagattgaGTTCATTGAATGGA
CTGCTGCTTCACAGCCTGCCTGTTGTCCAGCACAGACCTGAAGTGAGCCT
GTAGCCTTCACAATGTCCTCCTTCACAGTAGCAATAAGGGCTTTTCCGAA
AATCCTACGAATAACCTCGCCTATGCCAATTGGTCGAACACCCGGATCCT
TATCTAGGGGGATTAGACGACATGCTAAAAACGATTCAATGTCTCTTTCT
CTCGATTCTAGGGACAGTGATTGACGGCATAAAATTTTAAGCATGGTTGC
AAGTTCAACTCGAAAATCCTCACCAGTTTTACCATAGTTTCTGGAGGCAA
GAATTCTCCGCCAACCGTTCGCATCCATACCGGAAGGGCCTGCTGCTCCG
TTTGTTTTCAAAGCAGCAGAAAGAATGGAGGTGCTGTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044447-exon-sc0005593-1491911889:15..1358 | TCONS_00044447-exon-sc0005593-1491911889:15..1358 | Clytia hemisphaerica | exon |
| TCONS_00044447-exon-sc0005593-1510915933:15..1358 | TCONS_00044447-exon-sc0005593-1510915933:15..1358 | Clytia hemisphaerica | exon |
| TCONS_00044447-exon-sc0005593-1575043694:15..1358 | TCONS_00044447-exon-sc0005593-1575043694:15..1358 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005593 | supercontig | sc0005593:15..1358 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
