TCONS_00044448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044448
Unique NameTCONS_00044448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044448 ID=TCONS_00044448|Name=TCONS_00044448|organism=Clytia hemisphaerica|type=transcript|length=659bp
CacagttttaaaggttttgaaaGAGACCTTTCGGGGTCTCGTTTGAAAGT
AGACCTTACAAGACTTAAGCGATACCTTTCACGTTCCCATTTAAGACCTT
CGGGGTCTAGATTGGAATGTACGAAAGGCATATTAAAAAAGGTCTCAAAT
AGAACCTTTAATGGTTCCCtctcaaaaaatgtttcaaaagaaaCCTTAAA
AGGTCTCGTTTTATTTAATAAATAAACCCCGGGAGTCTGGTTATAAAGTG
TGTCCCTCTTAACACCCATTAAGGTCTCGATCAATAACTTTTGAGACCAT
CAATTTTTCCATAGACAAGCGTTTCATAAGTTTGATTATATTTTTGTCGC
GCGTGCAAAATGAGGTTGTTCTTTTTACGCGGTTTGCGCGACCTCTAACG
CTTTTTAAAGGTAATCGATTACTTTTCCaacaaagaattcaaaaattata
atgaagaatattttttttcaacgaaatttgTAGTGCCCataatatatctt
gtattttttattttgcctaGTAGTACTTTAAGTCTCTGCGAGCGGGAGCG
AATGGGGGAGGATGAGGggtttcctaattttttttgtgGTGTTTTAATTT
CGCTGATCAAAAAGCcttttttgagagtttgttaaaaagtatcaaaactC
GAAAAATAA
Run BLAST on NCBI

transcript from alignment at sc0005593:3556..4214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044448 ID=TCONS_00044448|Name=TCONS_00044448|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at sc0005593:3556..4214 (Clytia hemisphaerica)
TTATTTTTCGagttttgatactttttaacaaactctcaaaaaagGCTTTT
TGATCAGCGAAATTAAAACACcacaaaaaaaattaggaaaccCCTCATCC
TCCCCCATTCGCTCCCGCTCGCAGAGACTTAAAGTACTACtaggcaaaat
aaaaaatacaagatatattatGGGCACTAcaaatttcgttgaaaaaaaat
attcttcattataatttttgaattctttgttGGAAAAGTAATCGATTACC
TTTAAAAAGCGTTAGAGGTCGCGCAAACCGCGTAAAAAGAACAACCTCAT
TTTGCACGCGCGACAAAAATATAATCAAACTTATGAAACGCTTGTCTATG
GAAAAATTGATGGTCTCAAAAGTTATTGATCGAGACCTTAATGGGTGTTA
AGAGGGACACACTTTATAACCAGACTCCCGGGGTTTATTTATTAAATAAA
ACGAGACCTTTTAAGGtttcttttgaaacattttttgagaGGGAACCATT
AAAGGTTCTATTTGAGACCTTTTTTAATATGCCTTTCGTACATTCCAATC
TAGACCCCGAAGGTCTTAAATGGGAACGTGAAAGGTATCGCTTAAGTCTT
GTAAGGTCTACTTTCAAACGAGACCCCGAAAGGTCTCtttcaaaaccttt
aaaactgtG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028080XLOC_028080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044448-exon-sc0005593-1491911889:3556..4214TCONS_00044448-exon-sc0005593-1491911889:3556..4214Clytia hemisphaericaexon
TCONS_00044448-exon-sc0005593-1510915933:3556..4214TCONS_00044448-exon-sc0005593-1510915933:3556..4214Clytia hemisphaericaexon
TCONS_00044448-exon-sc0005593-1575043694:3556..4214TCONS_00044448-exon-sc0005593-1575043694:3556..4214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005593supercontigsc0005593:3556..4214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.394197	0.768809	0.267798	0.0873329	0.637916	0	2.02721	1.04382	0.132873	0.246877	0.958499	0.525066	0.629204	0.871245	0.358141	0.672595	0.710214	1.39523	1.25712	0.526195	1.60076	1.3385	0.451979	0.57528	0	0.0755449	0.432418	0.692232	0.525034	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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