TCONS_00044471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044471
Unique NameTCONS_00044471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044471 ID=TCONS_00044471|Name=TCONS_00044471|organism=Clytia hemisphaerica|type=transcript|length=365bp
CAACCTCTTCTTGATTGAAGTCTACATTCATTGGCATTTGCAAATAATCA
TCTTCAGGCAATTTATCAAATCTACTTCTATCAATAGCCACATTTTGGTA
CCTTGGGTTATTTGGTTCCCCCATACTATTCTTTCCGGTTAGCCACACTA
ATGcatcaagaactttttgtctACGCACTANCCTTACGCTTGTCTTTTGT
CTTTTCATAATAGATTTTTTTATCCTCACAGTTGTTTTTGTAataattct
tctttttcaaattaatacgttccttattttttgcataataTCTTTTATTG
ATCTCAGCTTTATCctcaatttttttgcttttgcttcTTAATGGATAGTC
CTTTAAATCATCTTT
Run BLAST on NCBI

transcript from alignment at sc0005631:3794..4158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044471 ID=TCONS_00044471|Name=TCONS_00044471|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0005631:3794..4158 (Clytia hemisphaerica)
AAAGATGATTTAAAGGACTATCCATTAAgaagcaaaagcaaaaaaattga
gGATAAAGCTGAGATCAATAAAAGAtattatgcaaaaaataaggaacgta
ttaatttgaaaaagaagaattatTACAAAAACAACTGTGAGGATAAAAAA
ATCTATTATGAAAAGACAAAAGACAAGCGTAAGGNTAGTGCGTagacaaa
aagttcttgatgCATTAGTGTGGCTAACCGGAAAGAATAGTATGGGGGAA
CCAAATAACCCAAGGTACCAAAATGTGGCTATTGATAGAAGTAGATTTGA
TAAATTGCCTGAAGATGATTATTTGCAAATGCCAATGAATGTAGACTTCA
ATCAAGAAGAGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028102XLOC_028102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044471-exon-sc0005631-1491911889:3794..4158TCONS_00044471-exon-sc0005631-1491911889:3794..4158Clytia hemisphaericaexon
TCONS_00044471-exon-sc0005631-1510915933:3794..4158TCONS_00044471-exon-sc0005631-1510915933:3794..4158Clytia hemisphaericaexon
TCONS_00044471-exon-sc0005631-1575043694:3794..4158TCONS_00044471-exon-sc0005631-1575043694:3794..4158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005631supercontigsc0005631:3794..4158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280424	1.21878	1.31983	0.755765	0.372943	0.512735	0.292386	0.669555	0.267481	0.526142	1.84327	0.454384	0.646658	0.80892	0	0.16428	0.389347	0.885017	0.838824	0.301236	1.28972	1.46308	0.260757	0.630918	0	0.457722	1.15252	0.477905	0.864837	1.02995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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